Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00421 ATGAAAAACAAAAAAAGTAATCGAACACCTACACCGTCTACACTGCCTGCACCGCCTGTAACGCCCAATCCATCTGGCCCTCCACGACCTCCCCATTACGCTTTCATGCCACCCCATATCCCTTTCTACCCTCCGCCACCTCCCCCTTGGTCTGCATTCCCCGGTGCTTGGCCGCTTCCCCACCCCCCTGGCCCACCACCAGCTGGCTTCTCAATACCGGTGCCACCGCCTCCAACTGGCCTTCCACAAGCCAACCTGGTGCCGAATGTGGCTTCGGGGAGGCCGCCGGGCCCTCCAATTCCTCCACCCCCACCTTTTGGTTTGTGGGCGCCGCCTGGTGTGTTTCCTTCTCCACCTATGACAATGGGTCCAGTCGTGCCACCGGCCTGTGCACAGGGTCCAACCGTTAGTGCTCCACCAGTTCAGCACGTGCAGCCAGCCCCACCTTTGAGGAAGCGTCCAGTCACACGGCGATCGCTTGCACAGGAAGCTGCTGCAAATGCTCAACAAGGGCAGCCTTCGAAACCAGACCCACCTTCGTCTGTGACAAGTAAAGTGTCACGGACCAGGAAGGTGAAATCTCTACAGTGTAATGATAAGGAAGATAAAGTCCGTCTTGGACTAGATAAATTAGAAGGCAATATGGGGGTGTCTGACGAAAGCATCCGAGACCCTCAATCTACTGCGGATGCAGAAGAATCTCCTAAAGAAGATGTTAACACAGCTGAAACCAGTGGAGGGGAAGACAATAATGCATCTCTTATTAAACTTGGGTCTGAGCCATACGTCGGTTTGCGATTTGGATCAGAAGATGAAGCATATGAATATTATAATGCATATGCTAAGGAGAAGGGATTTAGTATTCGCAAGAGTCATATACAACGCTCGAGGGTTGATCGCAGTGTGATTTCTCGGGAGTATGTGTGTGCAAATCAAGGGTTTCGTTCAACAAATGACAGACGATATAAAGGCAAGGTTGTGCGGCCTCGACGAGAAACAAGGGTAGATTGTCGAGCAGCTATGAGCATTAAAAGAAGATCTGGAAAATGGGTTATTGACCGATTTCATAAAGAGCACAATCATGATCTTGTTGATCCTGCTAAAGCTGAGAAACTTCGATCACATCGGAAAATTACAAATACTACAAAATCAGTGATTGACACACTCTATAAGTGTAGAATTGGACCATCTAAAATTGTAGATGTACTTACGAAAGCAGCATCTGGAGAGAATAAACTTGAAATTAATGGTTTAAATATCATGAAATATGTGAAGAAAGAGCGAAAGAATAACATCGGAGTTGACTGCTATCGTGTGCTTGAATACTTTCAGGGCATACAAGCAATGGATCCCGGCTTCTTCTATGCAATAGAAGTTGGTGAAAATCGGTCTATGAGGAGTATATTTTGGGCAGATAGCAGGGCAAGAGAAGCATACAAGCAGTTTGGGGATGTGCTGGTATTTGATACCGTTTGTCGAACAAACAAAGATTTGTCTCCATTTGCTTCTTTCACCGGAGTGAATCACCACAGGCAGCCTGTATTGTTCGGTTGCGGGTTTTTGGCAGATGACACTGTGGAATCCTTTGTTTGGTTATTTGAAACCTTGCTTAGAGCTATGTCGAATCGACAGCCTACTTCTATTATTACAAATCAAGACAAAGCAATGATGGTCGCAATAGAAAAGGTTTTTCCGAAAACGAAGCACCAATTTTGCATGTGGCAGATAGAGAAAAATGAGTTAGAAAATTTGAGCCATGTCTTTAATATGCACCCGGATTTTCAGGCAGAATACAAAAATTGCATCTACAGTAGTCAGAAGCCAGAAGAGTTCGAATCAGGTTGGGAGGCACTTCTTCTCAAGTACAATTTGAAGGACAATAATTGGTTAAATGGGATGTATGATCAACGCCGCCATTGGGTACCATTGTTCTTACGAGATACATTCTTTGCAGGCATGATTACAACAACACAGCCAAGTGAGGGCATGAACTCCTATTTTGATGGGTTTTTGCATGAAGGAACGTCGTTAAACGAGTTTGTTTCTCAATATGAAAGTGCTGTAAAGCGACGTCGTGATGAGGAAACCGATGAAGATTTTATGACAATGTACACAAGTGCAGTTTCGACATCAAAGAATCCTATTGAAGAACAAGCTGCAAAAGTTTATACTAGGAATATGTTCACAGTGTTTGGACACGAATTTTTTGAAAGCTCTGGTTGCGTTGCACGAAAGATCAATGAAGAGGAGCCTATAAATAAGTACCTAATAGGCAAGTACAGTGATACAGATGACCAAATGAACATTGTTACATTTAATCCAGCTGATAATAGTACAAGCTGCAGCTGTCAGATGTTTGAGTTTGAGGGGATGCTTTGCAAGCATGTGCTTAAAGTATTTCAAGAGGCAAATGTACTTGAGATTCCGCCTCAATACATCCTAAAGCGGTGGACGATGAATGCTAGGTATGTTGAGTCGTGTGATGATGAAGCTGGAGCTGATTCTCAGGATTCAACAACAATTAATCTTTGGACCTTGAAAGACACAGCAATAAAATTTGTAGAATGTGGGGCAACCTCTACTGAACGAATTAATATTGCTATCAACATCATTGAAGAGGGCATGAAAAAAATTTCCCTAATAACTTTGCCTACAAGTCCCTCATCTCCTGAAAATTTGGGCTGTAGTAGTGATCAAGGGAAAAAGATAAATGATAAAACTGCGCGTGACCCTCCACCAATCAAAACAAAAGATCGTTCTGCATCCTCTAAAATGAGACTGGGCATCAAACAGGCCCAGAAGAAGAAAAGGAAGTGCAGTACATGCAAGAAAACAGGACATTACACGCGCACGTGTCCGAAGGGATCTGCTGATCAGTCCAAGACATCCACCAATGTTGCAGGGACCTGTTGA 2913 0.4418 MKNKKSNRTPTPSTLPAPPVTPNPSGPPRPPHYAFMPPHIPFYPPPPPPWSAFPGAWPLPHPPGPPPAGFSIPVPPPPTGLPQANLVPNVASGRPPGPPIPPPPPFGLWAPPGVFPSPPMTMGPVVPPACAQGPTVSAPPVQHVQPAPPLRKRPVTRRSLAQEAAANAQQGQPSKPDPPSSVTSKVSRTRKVKSLQCNDKEDKVRLGLDKLEGNMGVSDESIRDPQSTADAEESPKEDVNTAETSGGEDNNASLIKLGSEPYVGLRFGSEDEAYEYYNAYAKEKGFSIRKSHIQRSRVDRSVISREYVCANQGFRSTNDRRYKGKVVRPRRETRVDCRAAMSIKRRSGKWVIDRFHKEHNHDLVDPAKAEKLRSHRKITNTTKSVIDTLYKCRIGPSKIVDVLTKAASGENKLEINGLNIMKYVKKERKNNIGVDCYRVLEYFQGIQAMDPGFFYAIEVGENRSMRSIFWADSRAREAYKQFGDVLVFDTVCRTNKDLSPFASFTGVNHHRQPVLFGCGFLADDTVESFVWLFETLLRAMSNRQPTSIITNQDKAMMVAIEKVFPKTKHQFCMWQIEKNELENLSHVFNMHPDFQAEYKNCIYSSQKPEEFESGWEALLLKYNLKDNNWLNGMYDQRRHWVPLFLRDTFFAGMITTTQPSEGMNSYFDGFLHEGTSLNEFVSQYESAVKRRRDEETDEDFMTMYTSAVSTSKNPIEEQAAKVYTRNMFTVFGHEFFESSGCVARKINEEEPINKYLIGKYSDTDDQMNIVTFNPADNSTSCSCQMFEFEGMLCKHVLKVFQEANVLEIPPQYILKRWTMNARYVESCDDEAGADSQDSTTINLWTLKDTAIKFVECGATSTERINIAINIIEEGMKKISLITLPTSPSSPENLGCSSDQGKKINDKTARDPPPIKTKDRSASSKMRLGIKQAQKKKRKCSTCKKTGHYTRTCPKGSADQSKTSTNVAGTC* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00421 970 MobiDBLite consensus disorder prediction 225 243 - -
Eupl03g00421 970 MobiDBLite consensus disorder prediction 882 901 - -
Eupl03g00421 970 MobiDBLite consensus disorder prediction 122 254 - -
Eupl03g00421 970 Pfam SWIM zinc finger 776 804 IPR007527 GO:0008270
Eupl03g00421 970 ProSiteProfiles Zinc finger SWIM-type profile. 768 804 IPR007527 GO:0008270
Eupl03g00421 970 Pfam FAR1 DNA-binding domain 275 364 IPR004330 -
Eupl03g00421 970 MobiDBLite consensus disorder prediction 1 32 - -
Eupl03g00421 970 MobiDBLite consensus disorder prediction 12 32 - -
Eupl03g00421 970 MobiDBLite consensus disorder prediction 952 970 - -
Eupl03g00421 970 SMART 26again6 779 806 IPR006564 GO:0008270
Eupl03g00421 970 MobiDBLite consensus disorder prediction 68 83 - -
Eupl03g00421 970 MobiDBLite consensus disorder prediction 902 924 - -
Eupl03g00421 970 MobiDBLite consensus disorder prediction 162 191 - -
Eupl03g00421 970 MobiDBLite consensus disorder prediction 882 938 - -
Eupl03g00421 970 ProSiteProfiles Zinc finger CCHC-type profile. 937 954 IPR001878 GO:0003676|GO:0008270
Eupl03g00421 970 Pfam MULE transposase domain 485 579 IPR018289 -
Eupl03g00421 970 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 243 879 IPR031052 GO:0006355
Eupl03g00421 970 MobiDBLite consensus disorder prediction 192 209 - -
Eupl03g00421 970 MobiDBLite consensus disorder prediction 951 970 - -
Eupl03g00421 970 MobiDBLite consensus disorder prediction 68 104 - -
Eupl03g00421 970 SUPERFAMILY Retrovirus zinc finger-like domains 930 959 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00421 Eupl-Chr3 18701944 18708385 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Eupl03g00421 MULE 1.9e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00421 - - psom:113346437 1182.93