Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00420 ATGCAAAATTCATCGGGTTCACGTTCTCCCCCTTTCGCTTTCTATGCCCCATCGTCTCCCCCTTGGTCTCCATTCCCCATTGTTTCGCCAATTTCTCACCCTGGTCCACCTCCGGCTGGTTTCTCCACATCGGAAACCATTCCGGTGTCAAATGTAGCTTCTGGAAGGCCATTGGAACACCCACATGGTTTGTTTTCTTCACCACCTACAACGACGGGTCACGACATGCTGCGGTTGAGTGCCCATGGACCAGACGCCAGTACTCCACCAGGCCTGCCCTCGCAACCTGTTTCAACTCAAGCCATACACCCAACTTTGGCTTCTCATTGTGGATCTGAGACGTGGCAGATGCAACGATCCCAGCGGTGTATTGAAATGGAAGATAACATTGGTCTTGATCAAGAAATATTGGAAACGGATGTGGTGGTGTTTGATGAAGGCATTCGAGAACCTCAACCTACTGCAGATGTGCAAGATTCTCCAAAGGGAGATGTTAAAACAGCTGGAACCAGTGGAAGGGAAGACAATAATTTATCCCCCAATAAACTTGGGTCTGAACCATATATTGGTTTGCAATTTGATTCAGAAGGTGAGGCATATGAATACTATAATGCATATGCAAAGGAGAAGGGATTTAGTATTCGAAGGAACCGTGTACAACGCTCAAGGGTTGATCATAGTGTGATCTCTCGGGAGTATGTGTGTGCAAAGCAAGGGTTCCGTTCATTAAAAGACAAACGGTACAAAGGCAAGGTTGTACGACCTCGACAAGAAACAAGGGTAGATTGTCGAGCAGCTATGAGCATTAAAAAAAGATCTGGAAAATGGGTTGTTTACCAGTTTCAGAAAGAACACAATCATGATCTTGTTGATTCTTCCAAAGCTGACAAACTTCGATCACATCATAAAATGACAAGCACTACAAAATCAATGGTCCAAACTCCCTATGAGATACAGTGTTTTGATATGGAAGGTAACATCAGTCTTGGTCAAGAAATATTAGAAGCCGATGTGGTGGTGTTTGATGAAAGCATTCGAGAATCTCAACCTACTGTAGATTTGCCAGAATCTGAAATGGGAGATGTGAACACAGCTGAAACCAGTGAAAGGGAAGATAATAATGTGCAAGAATCTCTGTCGGGAGATGCAAACACAGCTGAAACCAGTGGAAGGGAAGACTATAATGCATCCCTTGTTAAACTTGGGTCTGAACCGTACATTGGTTTGCGATTTGGTTCAGAAGATGAGGCATATGAATACTATAATGCATATGCTAAAGAGAAGGGATTCAGTATTCGAAGGAATCGTATACAACGCTCGAGGGTTGATCACAGTGTGATCTCTCGGGAGTATGTCTGTGCAAATCAAGGGTTTCGCAAAACAAATGACAAACGGTATAAAGGCAGGATTGTACGATCTCGTCGAGAAACAAGGGTAGATTGTCGGGCAGCCATGAGCATTAAAAAAAGATCTGGAAAATGGGTTGTTGACCAGTTTCATAATGAGCACAATCATGATCTTGTTGATCCGTCCAAAGCTGAAAAGCTTCGATCGCATCGGAAAATGACAAACACTACAAAATCAATCCTCGAAGCACTCTCTAAATGTGGAATTGGAGCATCTGAAATTACAGATTTACTTACAGAAGTAGCAGGTGGAGCGAAGGATATCATTGGAATCAGTGAACAAGATTGTGACAGTTATATGAAGAAAGAGAGAAGGAATAACATCAGAGTAGAATGCTATCGCTTACTTGACTACTTCCAGAGCATACAAGCAGTAGATCCTGGCTTCTTCTATGCAGTAGAATTTGATGAAAACCGGTGTATGAGGAGTATATTTTGGGCCGATAGCAAGGCAAGAGAAGCATACAAGCAGTTTGGTGATGTGCTGATCTTTGATACCATTTGTCGAACAAACAAATATTTGTTTCCATTTGCTTCTTTTACCGGAGTGAATCACCACAGGCAGTCTTTATTGTTTGGATGTGGGTTCTTGGCAGACGAGACTGTGGAATCTTTTGTCTGGTTATTTGAAATCTGGCTTGGAGCCATGTCAAATCAACAGCCTACTTCTATAATTACAAATCAAGACAAAGCAATGAAGGTTGCGATAGAGAAGGTTTTTCCAGGAACAAGGCACCGATTTGGCATTTGGCACATAGAGAAAGATGAGTTTGAAAATTTGAGCCATGTTTTTAATAGGCACAAGGACTTTCAGGCAGAATACAAAAAATGCATTTATAGCAGCCGGACGCCAGAAGAGTTTGAGTCAGGTTGGGAGGCGCTTATTGTGAAGTACAATTTAAAGGAGAATAAGTGGTTAAATAGGTTATATAATCAACGCCACCATTGGATACCATTGTACTTACAGGATACGTTCTTTGGTGGCATGACTACAACACAAAGGAGTGCGGGCATGAACTCCTATTTTGATGGGTTTTTGCATGGGGGAACACCATTCAGTGAGTTTGTTCCACAATATGAACGGGCTGTAAAGCAACGTCGTGAGGATGAGGCAAATGAAGATTTTTTGACAGTGTGCACAAGAGCAGCTTTGACATCAAAAAATCCTATAGAAGAACAAGCTGCAAGAGTTTATACGAGGAATATGTTCACAATTTTTGAACATGAATTTGTTGAAAGTTCTGGTTGCACAGCGCGAAGGATCGGTGATGAAGGGCCTATAAATAAGTATTTGGTAGGCAAGTACAGGGATAAAGATGATAAAATGAGCATCGTTGCATTTAATCCGGCTGATAATAGTGCAAGGTGCAGCTGTCAAATGTTTGAGTGCGAGGGGATGCTTTGCAGGCACGTGCTTAAAGTATTTCAAGTGGTAGATGTATTTGAGATTCCACCTCAATACATCCTAAAGCGGTGGACGATGAGTGCTAAGTATGCTGGGTCATGTAGTGATGAAGCTGGAGATGGCTCTCAGGATCCATCAACAGTTACTGTTTGGACCTTGAAAGACAAAACTAAAAAATTTGTAGAATTTGGGGAAGCCTCCACCGAACGAATTAATGCTGCTATTATCATCCTACAAGAGGGTATGAATAAACTTTCCCTCATCAGTGTTCCTACAGTTGCTGTACCTCCTCAAAATTTGGGGTGTGATAGTATTCAAGGGGAAAACATTGATGAGCAAAGTGAGAGTATATGGATGATGGACCTTAATATTACCGTGCCTGATCCTCCACGAGTTAAACCAAAAGGTCGTCCTGTATCCTCTAGAATGAAATTGGGCATCGAACAGGCCCAAAAGAAGAAAAGAACATGTGGTACATGCAAGGAAACTGGACATTACACTCGAACGTGTCCGAAGGGAACTGTTGATCAGTCCCAGACTTCCGCAATGTTGCAGGGGCCTGTTGATCAGACCCAGACTTCCGCAATGTTGCAGGAGCCTGTTGATCAGTCCCAGGCTTCTATGATGTTGCAGGGACCTTTTGGTCAGCCCCAGATTTTTGCAATGTTGTAG 3483 0.4269 MQNSSGSRSPPFAFYAPSSPPWSPFPIVSPISHPGPPPAGFSTSETIPVSNVASGRPLEHPHGLFSSPPTTTGHDMLRLSAHGPDASTPPGLPSQPVSTQAIHPTLASHCGSETWQMQRSQRCIEMEDNIGLDQEILETDVVVFDEGIREPQPTADVQDSPKGDVKTAGTSGREDNNLSPNKLGSEPYIGLQFDSEGEAYEYYNAYAKEKGFSIRRNRVQRSRVDHSVISREYVCAKQGFRSLKDKRYKGKVVRPRQETRVDCRAAMSIKKRSGKWVVYQFQKEHNHDLVDSSKADKLRSHHKMTSTTKSMVQTPYEIQCFDMEGNISLGQEILEADVVVFDESIRESQPTVDLPESEMGDVNTAETSEREDNNVQESLSGDANTAETSGREDYNASLVKLGSEPYIGLRFGSEDEAYEYYNAYAKEKGFSIRRNRIQRSRVDHSVISREYVCANQGFRKTNDKRYKGRIVRSRRETRVDCRAAMSIKKRSGKWVVDQFHNEHNHDLVDPSKAEKLRSHRKMTNTTKSILEALSKCGIGASEITDLLTEVAGGAKDIIGISEQDCDSYMKKERRNNIRVECYRLLDYFQSIQAVDPGFFYAVEFDENRCMRSIFWADSKAREAYKQFGDVLIFDTICRTNKYLFPFASFTGVNHHRQSLLFGCGFLADETVESFVWLFEIWLGAMSNQQPTSIITNQDKAMKVAIEKVFPGTRHRFGIWHIEKDEFENLSHVFNRHKDFQAEYKKCIYSSRTPEEFESGWEALIVKYNLKENKWLNRLYNQRHHWIPLYLQDTFFGGMTTTQRSAGMNSYFDGFLHGGTPFSEFVPQYERAVKQRREDEANEDFLTVCTRAALTSKNPIEEQAARVYTRNMFTIFEHEFVESSGCTARRIGDEGPINKYLVGKYRDKDDKMSIVAFNPADNSARCSCQMFECEGMLCRHVLKVFQVVDVFEIPPQYILKRWTMSAKYAGSCSDEAGDGSQDPSTVTVWTLKDKTKKFVEFGEASTERINAAIIILQEGMNKLSLISVPTVAVPPQNLGCDSIQGENIDEQSESIWMMDLNITVPDPPRVKPKGRPVSSRMKLGIEQAQKKKRTCGTCKETGHYTRTCPKGTVDQSQTSAMLQGPVDQTQTSAMLQEPVDQSQASMMLQGPFGQPQIFAML* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00420 1160 Pfam MULE transposase domain 630 723 IPR018289 -
Eupl03g00420 1160 Pfam SWIM zinc finger 920 946 IPR007527 GO:0008270
Eupl03g00420 1160 MobiDBLite consensus disorder prediction 377 391 - -
Eupl03g00420 1160 ProSiteProfiles Zinc finger SWIM-type profile. 910 948 IPR007527 GO:0008270
Eupl03g00420 1160 ProSiteProfiles Zinc finger CCHC-type profile. 1094 1109 IPR001878 GO:0003676|GO:0008270
Eupl03g00420 1160 MobiDBLite consensus disorder prediction 347 391 - -
Eupl03g00420 1160 SUPERFAMILY Retrovirus zinc finger-like domains 1087 1111 IPR036875 GO:0003676|GO:0008270
Eupl03g00420 1160 MobiDBLite consensus disorder prediction 149 185 - -
Eupl03g00420 1160 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 395 1023 IPR031052 GO:0006355
Eupl03g00420 1160 SMART 26again6 923 950 IPR006564 GO:0008270
Eupl03g00420 1160 MobiDBLite consensus disorder prediction 25 74 - -
Eupl03g00420 1160 Pfam FAR1 DNA-binding domain 201 290 IPR004330 -
Eupl03g00420 1160 Pfam FAR1 DNA-binding domain 419 508 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00420 Eupl-Chr3 18610562 18692958 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Eupl03g00420 MULE 8.5e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00420 - - psom:113356469 1449.11