Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00413 ATGTATGGAACAAACCTGAGAGATCTTGTTACTGTGAAGCATCCTGTTCTCGATATCCATCATCAGAAGAGTAACCCTGCATGCTACTTGAATTTCTCCTCGAAGCTGGCTGATATTGTCCTGTCACCGGTGGAATGCTTCCAGACGATGATTAAGCTGGTTGAATGTTTCATGTTTGCAATCCCAGCAGCACGGGCTCCACCACCTGTTTGCTGGTGCAGTAAAGCTGGGGCCCCAGTACTTCTTCACCCAGCTTATACGGAGAAATGCACGAAAATCTTGGCACCCCTTCTGTCACCCATTCGACCTGCCATTGTCCGGCGGCAAGTATATTTCCCTGACAGGCGGCTCATACAGTTTGACTGTGGTAAGCTGCAGGAGCTTGCAGTCTTACTCAGGCGGTTGAAATCAGAAGGCCACCGAGCATTAATATTTACCCAGATGACAAAGATGCTTGATCTCTTGGAGGCCTTCATTAACTTGTACGGTTACACTTATATGCGTTTAGATGGATCCACTCAGCCTGAAGACAGGCAAACGCTGATGCAGCGGTTTAATACAAACCCAAAAATCTTTCTTTTCATTTTGTCTACCCGTAGTGGAGGAGTCGGTATTAACTTAGTTGGGGCGGATACAGTTATATTCTATGACAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATCGATGCCACAGGATAGGGCAGACACGTGAAGTACATATTTATCGGTTAATCAGTGAAAGCACCATCGAAGAGAACATCTTAAAGAAAGCAAATCAGAAGCGTGCTCTCGATGATTTGGTTATACAGAGCGGAGGCTACAACACAGAATTCTTCAAAAAACTCGACCCAATAGAATTATTCTCGGGTCATAGAGCACTCTCAATCAAGAATATGCAGAAGGAGAAGACTTCTAACAATGAAGTGGAGATTTTCCTTTCAAATGCAGATGTGGAAGCCGCTTTGAAGCAGGCAGAAGATGAAGCCGATTACATGGCCTTGAAGAAAGTTGAACAGGAAGAGGCTGTGGACAACCAAGAGTTTTCAGATGAAGCCATTGGGAGATTGGAAGATGATGAGTTGGTTAATGAGGATGATGCGAAGTTTGATGAGAAGATCTCTGGAGATCAGAGCGGCTGGATTACAATCTCTAATAAAGATGTTGGTGTCATCTCAAATGGGAGTGATCCAAATGAAGAGAGGGCTCCCACTTTGGTGGGTAGAGAAGAAGATGTTGACATGCTAGCTCATGTCAAGCAGATGGCAGCAGCAGCTGCGGCAGCAGGACATGCAAGTTCATCCTTTGAGAGTCAGCTTCGACCGATTGATCGATATGCAATGCGTTTTCTGGATCTGTGGGACCCAATAATTGACAAATCAGCGATAGAATCTCAAGCTAGCTTCGAGGAGGCAGAATGGGAGCTGGATCGTATTGAGAAGTTCAAGGAGGATCTGGAAGCTGAGATTGATGATGACGAGGAACCATTCTTATATGAACGATGGGATGCTGATTTTGCAACTGAGGCTTACAGGCAACAAGTTCAGGCCTTGGCTCAGCGTCAGTTGGAGGAGGAACTGGAATGCGAGGCGAGAGAGGCAGAAGATGCAGAAGATGGAAACTGCGAGTCTTTGAGGAATGAGGTGTCAACTGAGCCTAAACCCAAATCAAAAAAGAAAACAAAGAAAACAAAGTTCAAATCTCTGAAGAAAGGAGCTCTAGCATCTGAATCGGAAACAGCACATGAGGGACCACCATTAGAGTCGATGTCCATTGATGATGAGGTTATATGCCCTGAGGTTGTTACCTGTTCAGACGACGCGCCACCACAATCACCAATTCAGAAAAAACGTAAGAAGGCTCAAGCAGCACCAGAGGTTGAAGAAGAGAAGATCACTAGGAAAAACTCCAAGAAACACAAGAAGGCTCCCCCTGAAGGCAGTCCTGTAGTTGTAGATTCCAACACTTCAGATAAGCAGCATGATGAAGCGAAAGAATCAAAAGCAGGTGGCACTGTAGTTGTCGATCTTGATCACAAGCCAGCAAGCAGGAGCAAGATGGGAGGAAAAATCTCAATTACTGCCATGCCAGTAAAGCGGGTTTTGGTGATCAAACCAGAAAAGTTAAAGAAGAAGGGAAATATTTGGTCAAGAGGTTGTACTTCATCGCCGGATTCTTGGTCATCACAGGAGGATGCGATATTATGTGCTATTGTACATGAGTATGGTACGCATTGGAGCTTGGTGAGTGATACACTGTATGGGATGACTGCTGGTGGGTTTTACAGGGGAAGATTTCGCCACCCTGCCTATTGTTGTGAGAGGTTTAGGGAACTTTTTCAGAGGTATGTTTTGTCTGCAATGGACAATCCTAATAATGAGAAAGTCAGCAACACTGGTTCTGGAAAGGCCATACTCAAAGTAACAGAGGATAATACTCGGACACTATTAGATGTGGCCAGTGATCTACCAGATAATGAATTACTTCTTCAGAAGCACTTCACTGCCGTGCTTTCTTCTGTCTGGAGGGCAAAATCCCGCTTAGATTGCTGGCAAAGCTTGTCAACTTCTCGGAATGGCCTTCATTTTGGAGGAAGATTTTTCACCTCTACCACCAACCACAATTACAGGAAGTCCATGAGGGAACCGCTAGAAAAGATGAACATGGCAGTTTTAGGGCAGAGCAGCAAGTTAGTAGCAGCTGCTCTCCATGATGGTAACAGAAAGCGACAGGATGATGCAGTGTTTCCAGCCGAAATGAGGGAAGAAGCTTCATCCATGGCAGAACAGTTGGAGATAACACTGGAATTCCAGAGTGACAAAGAACATTCTGAGATTCCTTTGCCATCGGCCATTAATCTGTCAATATGTGGTTCAGATCCACCACCTTCAGCAGACAAGTCAACAAGAGGGTGCCGGCTTCTGGAATCTTCTTGTAACATAGCTGAGAACCGTTTCAGGGTGGCGTCAAGAGCTTGCTTTGATGGTGAAAGTTTGGGTTGGGCTTCATCAGCTTTTCCAACTTGTGATTACATTAGATCTCGATCTATGTCAAAACCGCAGTCCTTGGGCAAACACAAGGTCTCCATGGCTGATTCAGTCAAGCTTTCGAAGGTCAAGCATCCAAGAACTGCAACAGAGCCTTGTGAGGAGGACCAACACCCAATCAGTAAACCATCACTTGCATCACCTAAGCCAGTGGTTTCTACTGATCCCATTGGGAGTCTCGATCTGCCACCGCTCATCATTCAGCCCATTGGTAATGGCGATGACAGCAGCTATCCCCTTTTTGGCATGGATGACGACCTTATTCCGGAGATGGAGAATTTTGAAGCAGTTCCTCATCACTATGACCCAGCCCTCATATTGGACCTCGAAGATTGTACATTGTTGCCAGATTATACGGACATTGGATGA 3420 0.455 MYGTNLRDLVTVKHPVLDIHHQKSNPACYLNFSSKLADIVLSPVECFQTMIKLVECFMFAIPAARAPPPVCWCSKAGAPVLLHPAYTEKCTKILAPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAVLLRRLKSEGHRALIFTQMTKMLDLLEAFINLYGYTYMRLDGSTQPEDRQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPIELFSGHRALSIKNMQKEKTSNNEVEIFLSNADVEAALKQAEDEADYMALKKVEQEEAVDNQEFSDEAIGRLEDDELVNEDDAKFDEKISGDQSGWITISNKDVGVISNGSDPNEERAPTLVGREEDVDMLAHVKQMAAAAAAAGHASSSFESQLRPIDRYAMRFLDLWDPIIDKSAIESQASFEEAEWELDRIEKFKEDLEAEIDDDEEPFLYERWDADFATEAYRQQVQALAQRQLEEELECEAREAEDAEDGNCESLRNEVSTEPKPKSKKKTKKTKFKSLKKGALASESETAHEGPPLESMSIDDEVICPEVVTCSDDAPPQSPIQKKRKKAQAAPEVEEEKITRKNSKKHKKAPPEGSPVVVDSNTSDKQHDEAKESKAGGTVVVDLDHKPASRSKMGGKISITAMPVKRVLVIKPEKLKKKGNIWSRGCTSSPDSWSSQEDAILCAIVHEYGTHWSLVSDTLYGMTAGGFYRGRFRHPAYCCERFRELFQRYVLSAMDNPNNEKVSNTGSGKAILKVTEDNTRTLLDVASDLPDNELLLQKHFTAVLSSVWRAKSRLDCWQSLSTSRNGLHFGGRFFTSTTNHNYRKSMREPLEKMNMAVLGQSSKLVAAALHDGNRKRQDDAVFPAEMREEASSMAEQLEITLEFQSDKEHSEIPLPSAINLSICGSDPPPSADKSTRGCRLLESSCNIAENRFRVASRACFDGESLGWASSAFPTCDYIRSRSMSKPQSLGKHKVSMADSVKLSKVKHPRTATEPCEEDQHPISKPSLASPKPVVSTDPIGSLDLPPLIIQPIGNGDDSSYPLFGMDDDLIPEMENFEAVPHHYDPALILDLEDCTLLPDYTDIG* 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00413 1139 MobiDBLite consensus disorder prediction 620 636 - -
Eupl03g00413 1139 Coils Coil 922 942 - -
Eupl03g00413 1139 Pfam Myb-like DNA-binding domain 728 782 - -
Eupl03g00413 1139 MobiDBLite consensus disorder prediction 530 673 - -
Eupl03g00413 1139 SUPERFAMILY Homeodomain-like 725 786 IPR009057 -
Eupl03g00413 1139 Coils Coil 470 490 - -
Eupl03g00413 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 296 IPR027417 -
Eupl03g00413 1139 SMART helicmild6 153 236 IPR001650 -
Eupl03g00413 1139 CDD SF2_C_SNF 112 247 - -
Eupl03g00413 1139 ProSiteProfiles Myb-like domain profile. 727 781 IPR001005 -
Eupl03g00413 1139 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 127 277 IPR001650 -
Eupl03g00413 1139 MobiDBLite consensus disorder prediction 539 556 - -
Eupl03g00413 1139 Coils Coil 518 541 - -
Eupl03g00413 1139 MobiDBLite consensus disorder prediction 1038 1055 - -
Eupl03g00413 1139 Coils Coil 324 344 - -
Eupl03g00413 1139 Gene3D - 723 781 - -
Eupl03g00413 1139 Gene3D - 89 343 IPR027417 -
Eupl03g00413 1139 Pfam Helicase conserved C-terminal domain 125 236 IPR001650 -
Eupl03g00413 1139 MobiDBLite consensus disorder prediction 657 673 - -
Eupl03g00413 1139 PANTHER HELICASE SRCAP-RELATED 1 1031 - -
Eupl03g00413 1139 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 89 343 - -
Eupl03g00413 1139 MobiDBLite consensus disorder prediction 1038 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00413 Eupl-Chr3 18356599 18362519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00413 139 266 RAD5 or RAD16-like Gene Family AT1G11100 43.750 2.63e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00413 K11661 - nnu:104587055 1553.11