Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00412 ATGGCCTCAAAAGGTCCTAGGTCTAAGTTTGATCATGAAACAAGAGCTAGGCGCCAAAAGGCGCTTGAAGCTCCTAGAGAACCTCGTCGCTCCAAAACACATTGGGATCATGTTTTGGAGGAGATGGTTTGGTTATCAAAGGACTTTGAGTCAGAGAGAAAATGGAAATTGGCTCTGGCAAAGAAGGTTGCTGTAAGAGCCAGCAAGAGCATGCTGGACCAGGCCACAAGGGGAGAAAAGAAAGTGAAGGAAGAAGAGCAGCGGGTGAGAAAAGTTGCACTCAATATTTCAAAGGATGTGAAGAAATTTTGGATAAAAATAGAGAAGCTGGTGCTTTACAAGCATCAGCTGGAGCTTGAGGAGAAAAAGAAAAAGGCACTTGATAAGCAGCTTGATTTTCTTTTAGGGCAGACTGAAAGGTACTCAACAATGCTAGCAGAAAATCTTGTTGACATGCCATATCCTTATAAACCAGTCTGTCCATATTCTGAAATGGAACAACCGTGTAATCAAGATAAAGAAGGGGATGCGAATGATCTTATGGAAACCACAGAACAATCTGAACCTCCACCGGATGATATGGATGTCGATGGTGATTATGATGTACAATCTGAAAATGAATCGGAAGATGATGAGCATACTATTGAGGAAGATGAGGCTCTTATTACGGAGGAAGAAAGGCAAGAAGAATTGGAAGCTTTGCAAGATGAAATGGATCTACCGCTTGAGGAGCTACTCAAGCGTTACAATATGGGTAAAGTTAGCAGGGAAGGAAGTCCAGAAAAGGGCGAAGACGTAGTTGAACTGACCTTAGTAGGGGAAGATCAGATTAAGGGCAAGGGAAACCTTCCTTCTGTTGTTAGTAAGATTGACACGAACAGCTCACTTGTAACTAGTATTGATGCTGGAGAAAGTAATGGTGACATATCCATTTTGGACGACCACATATCAGAAATTGAGACAAGTCAAACCAAAAATCGTTTGAGAGGCTCTAAGAAACCAGACAAACAAACTTTGCTATCTGATTCTAGTGATGAACAGGAGGATGGGGATTATGTTCTTGCAGCTGGAGAAGAAAAGGATGATGAGACAACCTTGTCAGAGGAGGAGAGGTTAGAAAAAGCTGAAGCAGATGACCCCTTGAATGAGATCGAGTTACTGCAAAAGGAGAGTGAAATGTCTGTAGAAGAATTGCTTGCAAGGTATAAAAAGGATTTCGATACTGATGAAGATGTTGAGGATGAACCAGAATATGCCTCCACCAGTACTGAGGATACGTTGGATTCTCTAGCATATCAAGATATTGAACTGAAGAGTCAAACTGTTCCTATGGATGAAGCTGCAGTTGAACAGGATAAACCTGGTGAGATCAACCATGTTGTGCACCCTGTTACAAAAGAAAATGAAGTGGAACAGAAGATAAAATCTGATGAAGAAAAGGAGAGTGAGAATAGAATTGCTGATGCAGCAGCTGCAGCAAGATCAGCACAACCAACGGGTAACACTTTCTCGACAACCAAAGTACGTACAAAGTTCCCCTTTCTTCTTAAGCACCCGCTTCGTGAGTATCAACATATCGGCTTGGATTGGCTTGTCACAATGTATGAGAAGAGACTTAATGGGATTCTAGCCGACGAAATGGGCCTTGGGAAGACAATCATGACTATCTCTCTCCTCGCCCACCTAGCATGTGAAAAGGGAATATGGGGCCCCCATCTCATAGTGGTTCCAACCAGTGTTATGCTTAACTGGGAAACCGAGTTTCTTAAATGGTGCCCTGCTTTTAAAATTCTGACTTACTTTGGAAGTGCAAAAGAACGCAAGTTTAAGAGGCAAGGTTGGTTGAAGCCAAATTCTTTCCATGTATGCATCACGACGTACAGACTTGTTATACAGGATTCAAAAGCTTTCAAGCGGAAGAAGTGGAAATACTTAATTCTAGATGAAGCTCATCTGATAAAAAACTGGAAGTCCCAGAGATGGCAAACTCTTTTAAACTTCAACTCAAAGCGGCGGATATTACTGACGGGGACTCCACTACAGAATGAACTCATGGAACTCTGGTCTCTAATGCATTTCTTGATGCCCCACATCTTTCAATCTCATCAAGAGTTCAAGGATTGGTTCAGTAATCCAATTACGGGAATGGTAGAGGGACAAGAAAAAGTAAACAAAGAAGTTGTTGATCGTTTGCATAATGTGCTCCGTCCATTCATACTTCGGCGGTTAAAAAGAGACGTGGAGAAGCAACTCCCAAAGAAATATGAGCATGTCATTTACTGTAGACTCTCGAAGAGGCAGCGGAACTTGTATGAAGATTTTATTGCCAGCTCCGAAACACAAGCAACATTGGCAAGTGCCAATTTTTTTGGGATGATTAGTGTTATAATGCAACTTCGTAAGGTTTGCAATCATCCAGACCTATTTGAAGGTCGTCCGATCATAAGTTCATTTGACATGAGCGGCATTGACATACAATTGAGTTCTTCCATTTGTACGATGCTTTCTTCTGGCCCATTCTCTATGGTTGACCTCAGGGGTTTGAATTTTTTATTTACTCATTTTGATTTCAGCATGACTTCTTGGGAGAGTGAAGAAGTCAAAGCTATTACTACCCCCTCAAGTCTAATCATGGAGCGTGCCAACCCAGAGAATCTAGAAAAAGTTGGGTTTCGTCCCAGGCCTAATGATCACAGGAAAAGAACACATGGAATTGATATTTTTGAAGAGATTCAAAAGCTCTCTGGGAGGAAAGAGTGA 2760 0.4181 MASKGPRSKFDHETRARRQKALEAPREPRRSKTHWDHVLEEMVWLSKDFESERKWKLALAKKVAVRASKSMLDQATRGEKKVKEEEQRVRKVALNISKDVKKFWIKIEKLVLYKHQLELEEKKKKALDKQLDFLLGQTERYSTMLAENLVDMPYPYKPVCPYSEMEQPCNQDKEGDANDLMETTEQSEPPPDDMDVDGDYDVQSENESEDDEHTIEEDEALITEEERQEELEALQDEMDLPLEELLKRYNMGKVSREGSPEKGEDVVELTLVGEDQIKGKGNLPSVVSKIDTNSSLVTSIDAGESNGDISILDDHISEIETSQTKNRLRGSKKPDKQTLLSDSSDEQEDGDYVLAAGEEKDDETTLSEEERLEKAEADDPLNEIELLQKESEMSVEELLARYKKDFDTDEDVEDEPEYASTSTEDTLDSLAYQDIELKSQTVPMDEAAVEQDKPGEINHVVHPVTKENEVEQKIKSDEEKESENRIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKHPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLVIQDSKAFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNELMELWSLMHFLMPHIFQSHQEFKDWFSNPITGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPKKYEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIISSFDMSGIDIQLSSSICTMLSSGPFSMVDLRGLNFLFTHFDFSMTSWESEEVKAITTPSSLIMERANPENLEKVGFRPRPNDHRKRTHGIDIFEEIQKLSGRKE* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00412 919 SMART ultradead3 516 709 IPR014001 -
Eupl03g00412 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 809 IPR027417 -
Eupl03g00412 919 CDD DEXQc_SRCAP 520 742 - -
Eupl03g00412 919 Gene3D - 766 824 - -
Eupl03g00412 919 MobiDBLite consensus disorder prediction 320 381 - -
Eupl03g00412 919 Pfam HSA domain 27 93 IPR014012 -
Eupl03g00412 919 ProSiteProfiles HSA domain profile. 22 96 IPR014012 -
Eupl03g00412 919 SMART bromneu2 23 94 IPR014012 -
Eupl03g00412 919 Gene3D - 488 765 IPR038718 -
Eupl03g00412 919 Coils Coil 110 137 - -
Eupl03g00412 919 PANTHER HELICASE SRCAP-RELATED 16 885 - -
Eupl03g00412 919 MobiDBLite consensus disorder prediction 1 33 - -
Eupl03g00412 919 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 766 831 - -
Eupl03g00412 919 MobiDBLite consensus disorder prediction 320 343 - -
Eupl03g00412 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 742 IPR027417 -
Eupl03g00412 919 MobiDBLite consensus disorder prediction 353 381 - -
Eupl03g00412 919 MobiDBLite consensus disorder prediction 186 229 - -
Eupl03g00412 919 FunFam Photoperiod-independent early flowering 1 490 765 - -
Eupl03g00412 919 Pfam SNF2-related domain 537 809 IPR000330 GO:0005524|GO:0140658
Eupl03g00412 919 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 532 697 IPR014001 -
Eupl03g00412 919 MobiDBLite consensus disorder prediction 165 229 - -
Eupl03g00412 919 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00412 Eupl-Chr3 18310094 18356533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00412 540 812 RAD5 or RAD16-like Gene Family AT5G43530 29.814 3.47e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl03g00412 SNF2_N 1.1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00412 K11661 - nnu:104587055 1371.3