Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl03g00412 | ATGGCCTCAAAAGGTCCTAGGTCTAAGTTTGATCATGAAACAAGAGCTAGGCGCCAAAAGGCGCTTGAAGCTCCTAGAGAACCTCGTCGCTCCAAAACACATTGGGATCATGTTTTGGAGGAGATGGTTTGGTTATCAAAGGACTTTGAGTCAGAGAGAAAATGGAAATTGGCTCTGGCAAAGAAGGTTGCTGTAAGAGCCAGCAAGAGCATGCTGGACCAGGCCACAAGGGGAGAAAAGAAAGTGAAGGAAGAAGAGCAGCGGGTGAGAAAAGTTGCACTCAATATTTCAAAGGATGTGAAGAAATTTTGGATAAAAATAGAGAAGCTGGTGCTTTACAAGCATCAGCTGGAGCTTGAGGAGAAAAAGAAAAAGGCACTTGATAAGCAGCTTGATTTTCTTTTAGGGCAGACTGAAAGGTACTCAACAATGCTAGCAGAAAATCTTGTTGACATGCCATATCCTTATAAACCAGTCTGTCCATATTCTGAAATGGAACAACCGTGTAATCAAGATAAAGAAGGGGATGCGAATGATCTTATGGAAACCACAGAACAATCTGAACCTCCACCGGATGATATGGATGTCGATGGTGATTATGATGTACAATCTGAAAATGAATCGGAAGATGATGAGCATACTATTGAGGAAGATGAGGCTCTTATTACGGAGGAAGAAAGGCAAGAAGAATTGGAAGCTTTGCAAGATGAAATGGATCTACCGCTTGAGGAGCTACTCAAGCGTTACAATATGGGTAAAGTTAGCAGGGAAGGAAGTCCAGAAAAGGGCGAAGACGTAGTTGAACTGACCTTAGTAGGGGAAGATCAGATTAAGGGCAAGGGAAACCTTCCTTCTGTTGTTAGTAAGATTGACACGAACAGCTCACTTGTAACTAGTATTGATGCTGGAGAAAGTAATGGTGACATATCCATTTTGGACGACCACATATCAGAAATTGAGACAAGTCAAACCAAAAATCGTTTGAGAGGCTCTAAGAAACCAGACAAACAAACTTTGCTATCTGATTCTAGTGATGAACAGGAGGATGGGGATTATGTTCTTGCAGCTGGAGAAGAAAAGGATGATGAGACAACCTTGTCAGAGGAGGAGAGGTTAGAAAAAGCTGAAGCAGATGACCCCTTGAATGAGATCGAGTTACTGCAAAAGGAGAGTGAAATGTCTGTAGAAGAATTGCTTGCAAGGTATAAAAAGGATTTCGATACTGATGAAGATGTTGAGGATGAACCAGAATATGCCTCCACCAGTACTGAGGATACGTTGGATTCTCTAGCATATCAAGATATTGAACTGAAGAGTCAAACTGTTCCTATGGATGAAGCTGCAGTTGAACAGGATAAACCTGGTGAGATCAACCATGTTGTGCACCCTGTTACAAAAGAAAATGAAGTGGAACAGAAGATAAAATCTGATGAAGAAAAGGAGAGTGAGAATAGAATTGCTGATGCAGCAGCTGCAGCAAGATCAGCACAACCAACGGGTAACACTTTCTCGACAACCAAAGTACGTACAAAGTTCCCCTTTCTTCTTAAGCACCCGCTTCGTGAGTATCAACATATCGGCTTGGATTGGCTTGTCACAATGTATGAGAAGAGACTTAATGGGATTCTAGCCGACGAAATGGGCCTTGGGAAGACAATCATGACTATCTCTCTCCTCGCCCACCTAGCATGTGAAAAGGGAATATGGGGCCCCCATCTCATAGTGGTTCCAACCAGTGTTATGCTTAACTGGGAAACCGAGTTTCTTAAATGGTGCCCTGCTTTTAAAATTCTGACTTACTTTGGAAGTGCAAAAGAACGCAAGTTTAAGAGGCAAGGTTGGTTGAAGCCAAATTCTTTCCATGTATGCATCACGACGTACAGACTTGTTATACAGGATTCAAAAGCTTTCAAGCGGAAGAAGTGGAAATACTTAATTCTAGATGAAGCTCATCTGATAAAAAACTGGAAGTCCCAGAGATGGCAAACTCTTTTAAACTTCAACTCAAAGCGGCGGATATTACTGACGGGGACTCCACTACAGAATGAACTCATGGAACTCTGGTCTCTAATGCATTTCTTGATGCCCCACATCTTTCAATCTCATCAAGAGTTCAAGGATTGGTTCAGTAATCCAATTACGGGAATGGTAGAGGGACAAGAAAAAGTAAACAAAGAAGTTGTTGATCGTTTGCATAATGTGCTCCGTCCATTCATACTTCGGCGGTTAAAAAGAGACGTGGAGAAGCAACTCCCAAAGAAATATGAGCATGTCATTTACTGTAGACTCTCGAAGAGGCAGCGGAACTTGTATGAAGATTTTATTGCCAGCTCCGAAACACAAGCAACATTGGCAAGTGCCAATTTTTTTGGGATGATTAGTGTTATAATGCAACTTCGTAAGGTTTGCAATCATCCAGACCTATTTGAAGGTCGTCCGATCATAAGTTCATTTGACATGAGCGGCATTGACATACAATTGAGTTCTTCCATTTGTACGATGCTTTCTTCTGGCCCATTCTCTATGGTTGACCTCAGGGGTTTGAATTTTTTATTTACTCATTTTGATTTCAGCATGACTTCTTGGGAGAGTGAAGAAGTCAAAGCTATTACTACCCCCTCAAGTCTAATCATGGAGCGTGCCAACCCAGAGAATCTAGAAAAAGTTGGGTTTCGTCCCAGGCCTAATGATCACAGGAAAAGAACACATGGAATTGATATTTTTGAAGAGATTCAAAAGCTCTCTGGGAGGAAAGAGTGA | 2760 | 0.4181 | MASKGPRSKFDHETRARRQKALEAPREPRRSKTHWDHVLEEMVWLSKDFESERKWKLALAKKVAVRASKSMLDQATRGEKKVKEEEQRVRKVALNISKDVKKFWIKIEKLVLYKHQLELEEKKKKALDKQLDFLLGQTERYSTMLAENLVDMPYPYKPVCPYSEMEQPCNQDKEGDANDLMETTEQSEPPPDDMDVDGDYDVQSENESEDDEHTIEEDEALITEEERQEELEALQDEMDLPLEELLKRYNMGKVSREGSPEKGEDVVELTLVGEDQIKGKGNLPSVVSKIDTNSSLVTSIDAGESNGDISILDDHISEIETSQTKNRLRGSKKPDKQTLLSDSSDEQEDGDYVLAAGEEKDDETTLSEEERLEKAEADDPLNEIELLQKESEMSVEELLARYKKDFDTDEDVEDEPEYASTSTEDTLDSLAYQDIELKSQTVPMDEAAVEQDKPGEINHVVHPVTKENEVEQKIKSDEEKESENRIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKHPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLVIQDSKAFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNELMELWSLMHFLMPHIFQSHQEFKDWFSNPITGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPKKYEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIISSFDMSGIDIQLSSSICTMLSSGPFSMVDLRGLNFLFTHFDFSMTSWESEEVKAITTPSSLIMERANPENLEKVGFRPRPNDHRKRTHGIDIFEEIQKLSGRKE* | 920 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl03g00412 | 919 | SMART | ultradead3 | 516 | 709 | IPR014001 | - | |
Eupl03g00412 | 919 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 744 | 809 | IPR027417 | - | |
Eupl03g00412 | 919 | CDD | DEXQc_SRCAP | 520 | 742 | - | - | |
Eupl03g00412 | 919 | Gene3D | - | 766 | 824 | - | - | |
Eupl03g00412 | 919 | MobiDBLite | consensus disorder prediction | 320 | 381 | - | - | |
Eupl03g00412 | 919 | Pfam | HSA domain | 27 | 93 | IPR014012 | - | |
Eupl03g00412 | 919 | ProSiteProfiles | HSA domain profile. | 22 | 96 | IPR014012 | - | |
Eupl03g00412 | 919 | SMART | bromneu2 | 23 | 94 | IPR014012 | - | |
Eupl03g00412 | 919 | Gene3D | - | 488 | 765 | IPR038718 | - | |
Eupl03g00412 | 919 | Coils | Coil | 110 | 137 | - | - | |
Eupl03g00412 | 919 | PANTHER | HELICASE SRCAP-RELATED | 16 | 885 | - | - | |
Eupl03g00412 | 919 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Eupl03g00412 | 919 | FunFam | Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 | 766 | 831 | - | - | |
Eupl03g00412 | 919 | MobiDBLite | consensus disorder prediction | 320 | 343 | - | - | |
Eupl03g00412 | 919 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 502 | 742 | IPR027417 | - | |
Eupl03g00412 | 919 | MobiDBLite | consensus disorder prediction | 353 | 381 | - | - | |
Eupl03g00412 | 919 | MobiDBLite | consensus disorder prediction | 186 | 229 | - | - | |
Eupl03g00412 | 919 | FunFam | Photoperiod-independent early flowering 1 | 490 | 765 | - | - | |
Eupl03g00412 | 919 | Pfam | SNF2-related domain | 537 | 809 | IPR000330 | GO:0005524|GO:0140658 | |
Eupl03g00412 | 919 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 532 | 697 | IPR014001 | - | |
Eupl03g00412 | 919 | MobiDBLite | consensus disorder prediction | 165 | 229 | - | - | |
Eupl03g00412 | 919 | Coils | Coil | 217 | 237 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl03g00412 | Eupl-Chr3 | 18310094 | 18356533 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl03g00412 | 540 | 812 | RAD5 or RAD16-like Gene Family | AT5G43530 | 29.814 | 3.47e-28 | 120 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Eupl03g00412 | SNF2_N | 1.1e-70 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl03g00412 | K11661 | - | nnu:104587055 | 1371.3 |