Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00404 ATGGCAAACTTGAAGACCGATTCTCCCGTCTCTCGTCGCATCGTCTTGGCTTTCTTGGATTTCCTCAAATCCGTTGAACCTGATCCTGGTATTGATCTTGAAGGTCTTGAGGTTGTTAAGGAGTGTTTGGAAGAGGTTTTTAAGCTCAATTCATCTTCTATTGATGATCGGACACAACCTGGTTTGTTGGTTGATTACTTCCGTTCTTTGGATGCAAATAAACAACATGAAATCAAATTGTCTCTGGGTCAAGTAGCAACGTCAGTGGACGCACCCAGTCCATCCTCAACACAGAATGCTGCAGATGCAAATCTTTCAGAGACATCAAAACCACTGAGTGAGGATCAGGCTGGAGAAACCCATGCCATAGGGGTGTCAAAAGATGAACTGTTTGGGCAATTCTTTGGTGCACTTGATAAAATTCACTTTTTTAAGACAACAACTGATGGAGCTGAGGACCATGTCCAACTGGATAAAGCAACACGTGTATTTCATGAGGCTGTACTGGAATTGGAACAATCTGGATGCAAAACAATTAATCGGACCAACCTGGCTGAGTCATTAAAATCACAAGGTAACAGGGCCATGCAGTCGAATTTATACTCAGATGCAATTGAGCTGTATACTTGTGCCATTGCACTTTGGGAGAATAATGCTGTGTACTACTGTAACAGGGCAGCTGCTTACACCCAGATACATAAATATACTGATGCAATCAGAGACTGTCTTAAATCAATAGAAATTGATCCAAATTACAGCAAAGCATACAGTCGCCTGGGCCTGGCTTATTATGCACAAGGGAATTATGGTGATGCTATCAACCAAGGATTTGTGAAAGCCTTACAATTGGATCCAAACAGTGATTCCATCAAAGAAAATATTCGGGTGGCCGAGCAAAAATTGAAAGAAGAGTTGCAACGAACAGAAAGAGATCAGAATGCAGGGTCAACAAGTCATAATAACCAACCAAATAGCCAGTCCACAGGCGGTTCAAGGAACCATGGTGCACCACCAGCATTCACATCTATGCCTTTTAATGCTGCTGCCCTCCCCACCGATTTTGCAAACATCCTCATGAACATGACTACGAATGCATATCAGGGTCGGCATGCTCAAGAGAGACCGCATGATGGCAGTGACCCAGACAGGTTAGATGAGCCTGAAATAAGAATGGGGGGGAACATAAACATGAACTTCGGTGACGAACTACCTGAGGAACTTATGGGGGCCTGGAGATCTGTGATGGGGATGTTCTCAGGTGCACAACCCCATCAGCATCCACAAGGGGACATGAATGGGGGTTCAACACCGAACTAA 1317 0.4412 MANLKTDSPVSRRIVLAFLDFLKSVEPDPGIDLEGLEVVKECLEEVFKLNSSSIDDRTQPGLLVDYFRSLDANKQHEIKLSLGQVATSVDAPSPSSTQNAADANLSETSKPLSEDQAGETHAIGVSKDELFGQFFGALDKIHFFKTTTDGAEDHVQLDKATRVFHEAVLELEQSGCKTINRTNLAESLKSQGNRAMQSNLYSDAIELYTCAIALWENNAVYYCNRAAAYTQIHKYTDAIRDCLKSIEIDPNYSKAYSRLGLAYYAQGNYGDAINQGFVKALQLDPNSDSIKENIRVAEQKLKEELQRTERDQNAGSTSHNNQPNSQSTGGSRNHGAPPAFTSMPFNAAALPTDFANILMNMTTNAYQGRHAQERPHDGSDPDRLDEPEIRMGGNINMNFGDELPEELMGAWRSVMGMFSGAQPHQHPQGDMNGGSTPN* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00404 438 SMART tpr_5 253 287 IPR019734 GO:0005515
Eupl03g00404 438 SMART tpr_5 219 252 IPR019734 GO:0005515
Eupl03g00404 438 SMART tpr_5 185 218 IPR019734 GO:0005515
Eupl03g00404 438 MobiDBLite consensus disorder prediction 419 438 - -
Eupl03g00404 438 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 180 333 - -
Eupl03g00404 438 SUPERFAMILY TPR-like 184 298 IPR011990 GO:0005515
Eupl03g00404 438 Pfam Tetratricopeptide repeat 219 252 IPR001440 GO:0005515
Eupl03g00404 438 PANTHER LD24721P 1 428 IPR047150 -
Eupl03g00404 438 MobiDBLite consensus disorder prediction 88 115 - -
Eupl03g00404 438 MobiDBLite consensus disorder prediction 304 344 - -
Eupl03g00404 438 Gene3D Tetratricopeptide repeat domain 176 343 IPR011990 GO:0005515
Eupl03g00404 438 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Eupl03g00404 438 MobiDBLite consensus disorder prediction 88 119 - -
Eupl03g00404 438 Coils Coil 287 311 - -
Eupl03g00404 438 MobiDBLite consensus disorder prediction 311 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00404 Eupl-Chr3 17969942 18040458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00404 184 283 U-box Gene Family AT3G07370 34.000 2.75e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00404 K16365 - nnu:104587827 628.632