Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00396 ATGGGATTCAGGTCGTCGCCCGGCGAGAGTGTGATAGTGGTGATGGACGCGAATCGCAACAAAGGAAGCGTGGATGCCCTGAATTGGGCTCTCAACCATGTGGTTCGCCCGAAAGATACTGTTGTCGTTATTGGAATTCTCTGCGAGTTCGGGAAAAAAAGTTCCTGCTTACCTTTCTACATGGGCATTAGCATCTCTGCCATCTGGGAAAGACTAGAGTTCTCTGGACAGGGGGACATGACCTCAAAAGTGCTTGAAGAGGAGATTACAAGGAAGAGGGAACAATATCAGTCCACCCTCCAGCCATTCTACCGGCAGTGCAAGAAGAATGAGGTGAAGTTGGAAGTTAAGCTTGCTGCAGGATTTGATCCCAAGAAGATAACCATTGAAGAAGCTCAAAACACTAATACTCGTTGGATTGTATTAGACAGCCACTTAAAGAAAGATAAAGTATTTATATATGAGCATGTAGGCTGCAATATTGCAGCAATGAAAGGAAAAGATGTAGCGACTATAATGATGTCAAGATCTACCGATTCCGAAGGGCTAACTAGAAAGCCCATGAACATTGAAATGGGATCCACTTCAGCTGTTCAGCCAGAGAAACTGCAAAATGAGGATCTGAATGCTCTCGAAGGAAAGAAATTACCTGCTTCACCTCCCCAAAGTCCCTGCTGGTACCCACTTTCATGGCGGACTGGTTTTCCTCGAAATTTCACTCATACTGAAGTTGAAAGCATAACAAATGGATTTGCAGAGGAGACTATTGTTTTTGAGGAGGAGAACTTGCGAGTTTACCAAGGGATTCTTATGGAATCTCCTGTTCTTGTCAAGTGCTTCATTGGCAACGATGCACATTTCTGGTCAGAACTCAAGATCCTTTCTCGCGTTCGCCACCGCAACATTCTGAACCTTGTGGGGTATTGCTGCACTGATGTTTCTATGTTCTTGCTCCTGGATTACCCCGGTGATGGCTCTCTTGACATGCACTTGCAATGTGACAAGTTAGCTAAGAACCTACCATGGAAAGCAAGGTGGGATATTGCACTTGAAATTGGTGGCTGCTTGCGCTACCTTCACGAGGATTGCCTTGATGGACCCATCGTGCACCTCTCCGTCAGTTCCTCTCACATTGTATTCTCTCAAGGTTGTGCCACTATGCCGCAGCTTACTGAATTCACATCCGCAAAGTGTCTTATGGATGGTACTACTTTTCATGGAGCTTTATCTGTGGAAGGACACACTGAATGTCAGACTGAGGCGGCAGATCAACGACTTTCTCTTGATGTACATGCATACGGGGTGTTCCTCTTGGAGCTTGTAACCGGACAGAGAGACTTTGACTTCCATGCCTGCAGAGAGGGTCAGTCATTGACAGATTGGGCATTGCCACTCCTAGAAAATGGTTCCCTGAGCCAAGTCATGGATCCAAGGTTGATGGAATCTGGTGATGCTAAGGAGGCTCATCATATGGCATGCGCTGCATTGCTATGTTTGAAGGACGGTTGTGGGCATCAGCCCTGCATGAGTGAGGTGTTGGCTGTGGTTCGAGGTGATCGATTGGGGACGTCTCACTATTGA 1581 0.4662 MGFRSSPGESVIVVMDANRNKGSVDALNWALNHVVRPKDTVVVIGILCEFGKKSSCLPFYMGISISAIWERLEFSGQGDMTSKVLEEEITRKREQYQSTLQPFYRQCKKNEVKLEVKLAAGFDPKKITIEEAQNTNTRWIVLDSHLKKDKVFIYEHVGCNIAAMKGKDVATIMMSRSTDSEGLTRKPMNIEMGSTSAVQPEKLQNEDLNALEGKKLPASPPQSPCWYPLSWRTGFPRNFTHTEVESITNGFAEETIVFEEENLRVYQGILMESPVLVKCFIGNDAHFWSELKILSRVRHRNILNLVGYCCTDVSMFLLLDYPGDGSLDMHLQCDKLAKNLPWKARWDIALEIGGCLRYLHEDCLDGPIVHLSVSSSHIVFSQGCATMPQLTEFTSAKCLMDGTTFHGALSVEGHTECQTEAADQRLSLDVHAYGVFLLELVTGQRDFDFHACREGQSLTDWALPLLENGSLSQVMDPRLMESGDAKEAHHMACAALLCLKDGCGHQPCMSEVLAVVRGDRLGTSHY* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00396 526 Gene3D Transferase(Phosphotransferase) domain 1 323 521 - -
Eupl03g00396 526 Pfam Protein kinase domain 285 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g00396 526 Gene3D HUPs 4 156 IPR014729 -
Eupl03g00396 526 PANTHER OS01G0253100 PROTEIN 186 517 - -
Eupl03g00396 526 SMART serkin_6 258 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g00396 526 Gene3D Phosphorylase Kinase; domain 1 229 321 - -
Eupl03g00396 526 ProSiteProfiles Protein kinase domain profile. 241 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g00396 526 SUPERFAMILY Protein kinase-like (PK-like) 229 514 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00396 Eupl-Chr3 17502069 17511828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00396 234 522 Receptor kinase-like Gene Family AT5G16000 32.119 8.50e-32 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Eupl03g00396 Pkinase 4.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00396 - - msin:131230335 590.112