Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00300 ATGGCGTCATCCGTGGTGAACGAGATCCTAATTCTTGAACCTCACATCTGGAAGGCCTGCGCGGGAAGCTATGTGCAAATCCCGACTGTTGATTCTAGAGTTTACTACTTCCCCCAAGGTCACGCCGAGCGATCCACGTCTCCTCCTGACATATCTTGTTTCATCTCCTCCAAGCCTTTCGTTTTCTGCCGAATCGTCTCCGTTCGTCTCCTCGCGAATCCGAACACCGACGAGGTCTTTGCCAAGATTCGTCTCGAACCTGTTGATCGGTTTCTTGACGTAATCGTCCATAAGTCGATTGCTCCGGTATCTTTGTCTCCGGAGGGGCATGATGATGAGGGCGACGATGAGAAGGTTGCGTCATTTGCTAAGATCGTCACAGCGAGTGATGTGAACAATGGCGGTGGATTCTCAGTCCCAAGGGTTTGTGCTGAATCGATCTTTCCTCCATTGAACTACGAGGTGGTTAAGCCGGCGCAGACAATTTCGGTGAGAGACGTTCAAGGAGTGGTTTGGGAGTTCCGGTATGTCTACCGTGGTACCCCTCGGCGCCATATGCTAACGACCGGATGGAGTAAGTTTGTCCATCATAAGAATCTTATTGCTGGGGATTCTGTGGTTTTCATGAGGAATCAGAGTGGTAACCTTTATGCTGGGATCAGACGTACGAGAAAGTCGAGCACGATTGTAAATTCTGGCCGCTGGAATGGTCAGATTGAGACCGGGCCAAAATTGGAAGAGGTGCTCGGAAGCGGGGAGGGGTTCTCGAGTAGTAGTAGGGGTCGGGTTTCTGCTGAGTCAGTAGTAGAGGCTGCTGAACTAGCAGGAGTTGATAGGCCTTTTGAGATAGTTTATTATCCAAAAATGGGGTTGCCGGATTTTGTTGTGGAAGCCAATGCAGTGGAGAAATCTTTGAATACGTATTGGGAGGCAGGGATGAGGATTAAGATGGCGGTGGAGTCGGAGTACTCGTCCAGGATGACATGGTTCCGGGGAACAATTTCATCTGCCAAGGTACCTGATCATGGGCCGTGGCATGGCTCTCCGTGGCGCATGCTTCAGGTTACCTGGGATGAACCTGACGTTTCGCAGAATATAAATAGAGTGAGCCCTTGGGAAGTCGAATTGAGTACAGGCACACCACCACTTCCGACATTATTACCCCCAATGAAGAAATTCCGAGTCTCTCGGGATACAGAGTTGATGACTGATAGAGAGGGGGCACTGTTCTTTCCCATGAGAGGATTGACGAATTCAATGAGGGGGCTCTTGAGCCCATCATTGGATAATTATAATACCTCTCCTGTTGGCATACAGGGCGCCAGGCATGATTCGATCTGTGTATCCAGTTTAGCTAACTTGTTAGCTAATAATACCCATCAGAAGCACTCTGGCCATGTCTATGGCATAATGGCACCAAAGTTGAGTCCAGTGACTCCAGTCTCAACTGAGTTGAGCATTGGGAGGACATCACATTTGGACAACTCATCGTCGCCCAGCAAGGGCAATGTGCATTTCTTAGGCACAGAGCGTATTGGCAACCAGAACTGCAACTCGATAACAAAATCTGGTGGTGGGTCTTTTCAGTTATTCGGTAAGACCATTCAGACAAACCCGCCTGTTGAGGCTGGGCTTGATGATGGTGGTAAAGGACGCAAAGAGACCGAGGGCGTGATCAAACCACTCGATACTTCCTTACGCTGTATAACAGGCTTGATGTTCAACGTCAAAGGACCTCAGCTGTAA 1746 0.4937 MASSVVNEILILEPHIWKACAGSYVQIPTVDSRVYYFPQGHAERSTSPPDISCFISSKPFVFCRIVSVRLLANPNTDEVFAKIRLEPVDRFLDVIVHKSIAPVSLSPEGHDDEGDDEKVASFAKIVTASDVNNGGGFSVPRVCAESIFPPLNYEVVKPAQTISVRDVQGVVWEFRYVYRGTPRRHMLTTGWSKFVHHKNLIAGDSVVFMRNQSGNLYAGIRRTRKSSTIVNSGRWNGQIETGPKLEEVLGSGEGFSSSSRGRVSAESVVEAAELAGVDRPFEIVYYPKMGLPDFVVEANAVEKSLNTYWEAGMRIKMAVESEYSSRMTWFRGTISSAKVPDHGPWHGSPWRMLQVTWDEPDVSQNINRVSPWEVELSTGTPPLPTLLPPMKKFRVSRDTELMTDREGALFFPMRGLTNSMRGLLSPSLDNYNTSPVGIQGARHDSICVSSLANLLANNTHQKHSGHVYGIMAPKLSPVTPVSTELSIGRTSHLDNSSSPSKGNVHFLGTERIGNQNCNSITKSGGGSFQLFGKTIQTNPPVEAGLDDGGKGRKETEGVIKPLDTSLRCITGLMFNVKGPQL* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00300 581 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl03g00300 581 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Eupl03g00300 581 CDD B3_DNA 121 222 IPR003340 GO:0003677
Eupl03g00300 581 Gene3D - 119 223 IPR015300 -
Eupl03g00300 581 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 543 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl03g00300 581 SUPERFAMILY DNA-binding pseudobarrel domain 118 226 IPR015300 -
Eupl03g00300 581 Gene3D - 309 380 - -
Eupl03g00300 581 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Eupl03g00300 581 SMART B3_2 122 224 IPR003340 GO:0003677
Eupl03g00300 581 FunFam Auxin response factor 120 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00300 Eupl-Chr3 10557357 10560542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00300 12 556 B3 DNA Binding Superfamily AT1G77850 41.711 1.05e-135 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl03g00300 B3 5.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00300 - - nnu:104612061 654.825