Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00274 ATGAAGAAATCCTCACCAGCATCAACTTCAAAGCCCTCTTCAGTCCTTCCTTACAAGACCCAAAATCTCAGAGATCTTTACCTGATTGGCAAAAAGTTAGGGCAAGGTCAGTTTGGAACTACATATCTCTGCACAGACAAGTCAACAGGCACCCAATATGCCTGCAAATCTATCCCCAAGAGGAAACTTTTGTGTAGAGAAGACTATGAGGATGTATGGAGAGAGATTCAGATAATGCATCACTTGTCTGAGCACCCAAACGTGGTCAGGATTAGAGGGACATATGAAGACTCTTTATTTGTTCATTTGATCATGGAGCTCTGTGCAGGAGGTGAGCTCTTCGATCGGATTGTTCAGAAGGGGCATTACAGTGAGAGGAAAGCTGCCCATCTCCTCAAGACCATTGTTGGGGTTGTCGAGGCTTGTCACTCTCTTGGGGTCATGCATAGAGACCTCAAGCCTGAGAACTTCTTGTTCGCTAGCACCGATGAGGATGCCGCTCTCAAGGCCACCGATTTTGGCTTGTCCGTGTTCTACAAGCCAGGGGACACTTTTTCTGATGTAGTTGGAAGTCCCTATTATGTTGCACCGGAGGTGTTGCGTAAGCATTATGGACCTGAAGCCGACGTTTGGAGTGCTGGAGTTATCTTGTACATCTTATTAAGTGGTGTTCCACCTTTTTGGGCAGAAACTGAATCTGGGATCTTCAGACAGATTCTACAAGGGCAATTAGATTTTGAATCTGAACCATGGCCTGGAATCTCAGAAAGTGCCAAAGATCTAATACGGAAAATGCTTGAAAGGAACCCAAAGAAAAGACCGACTGCTCATGAAGTTCTGTGTCACCCATGGATCGTGGATGACAGAGTTGCCCCGGATAAACCTCTAGATTCTGCAGTTTTATCACGCCTGAAGCAGTTCTCTGCAATGAATAAACTTAAGAAGATGGCTTTGCGCGTCATAGCAGATAAACTGTCAGAGGAAGAAATCGGTGGTTTGAAAGAGTTGTTCAAAATGATTGACACAGACAACAGTGGGACGATAACGTTTGATGAACTAAAAGATGGTTTGAGGAGAGTGGGATCTGAGCTCATGGAGTCTGAGATCAAGGCCCTTATGGATGCAGCTGATATTGACAACAGTGGAACCATAGACTATGGCGAATTTCTTGCAGCTACAGTGCACTTGAACAAGATGGAGAGAGAGGAAAACTTAATGACAGCCTTCTCTTTTTTCGACAAGGATGGTAGTGGTTACATAACCATTGATGAGCTTCAACAGGCTTGCAGAGAATTTGGTCTGAGTGAGGTTCACCTGGATGATATGATCAAAGAAATTGATCAAGACAATGATGGGCAGATAGATTATGGGGAGTTTGCTGCAATGATGAGAAAAGGCAATGGGGGAATTGGGAGGAGAACCATGAGAACCAATTTGAACTTTAACTTGGGTGATGCTCTGAGAGCAAAAGACACATAA 1479 0.4435 MKKSSPASTSKPSSVLPYKTQNLRDLYLIGKKLGQGQFGTTYLCTDKSTGTQYACKSIPKRKLLCREDYEDVWREIQIMHHLSEHPNVVRIRGTYEDSLFVHLIMELCAGGELFDRIVQKGHYSERKAAHLLKTIVGVVEACHSLGVMHRDLKPENFLFASTDEDAALKATDFGLSVFYKPGDTFSDVVGSPYYVAPEVLRKHYGPEADVWSAGVILYILLSGVPPFWAETESGIFRQILQGQLDFESEPWPGISESAKDLIRKMLERNPKKRPTAHEVLCHPWIVDDRVAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIADKLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLRRVGSELMESEIKALMDAADIDNSGTIDYGEFLAATVHLNKMEREENLMTAFSFFDKDGSGYITIDELQQACREFGLSEVHLDDMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRTNLNFNLGDALRAKDT* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00274 492 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Eupl03g00274 492 SMART efh_1 438 466 IPR002048 GO:0005509
Eupl03g00274 492 SMART efh_1 332 360 IPR002048 GO:0005509
Eupl03g00274 492 SMART efh_1 368 396 IPR002048 GO:0005509
Eupl03g00274 492 SMART efh_1 404 432 IPR002048 GO:0005509
Eupl03g00274 492 FunFam Calcium-dependent protein kinase 1 29 112 - -
Eupl03g00274 492 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Eupl03g00274 492 Gene3D - 398 491 - -
Eupl03g00274 492 SUPERFAMILY Protein kinase-like (PK-like) 27 296 IPR011009 -
Eupl03g00274 492 Pfam Protein kinase domain 29 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g00274 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Eupl03g00274 492 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Eupl03g00274 492 FunFam CDPK-related kinase 3 19 187 - -
Eupl03g00274 492 CDD EFh 333 392 IPR002048 GO:0005509
Eupl03g00274 492 ProSiteProfiles EF-hand calcium-binding domain profile. 328 363 IPR002048 GO:0005509
Eupl03g00274 492 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Eupl03g00274 492 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Eupl03g00274 492 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g00274 492 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g00274 492 Gene3D Phosphorylase Kinase; domain 1 28 113 - -
Eupl03g00274 492 Gene3D - 326 397 - -
Eupl03g00274 492 Gene3D Transferase(Phosphotransferase) domain 1 114 325 - -
Eupl03g00274 492 FunFam Calcium-dependent protein kinase SK5 195 290 - -
Eupl03g00274 492 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Eupl03g00274 492 Pfam EF-hand domain pair 402 464 IPR002048 GO:0005509
Eupl03g00274 492 Pfam EF-hand domain pair 333 393 IPR002048 GO:0005509
Eupl03g00274 492 ProSiteProfiles EF-hand calcium-binding domain profile. 438 469 IPR002048 GO:0005509
Eupl03g00274 492 ProSitePatterns EF-hand calcium-binding domain. 341 353 IPR018247 -
Eupl03g00274 492 CDD EFh 405 464 IPR002048 GO:0005509
Eupl03g00274 492 FunFam Calcium-dependent protein kinase 1 293 467 - -
Eupl03g00274 492 CDD STKc_CAMK 27 284 - -
Eupl03g00274 492 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 459 - -
Eupl03g00274 492 SUPERFAMILY EF-hand 324 464 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00274 Eupl-Chr3 9175960 9198598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00274 1 492 EF-hand Containing Proteins AT4G09570 80.325 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Eupl03g00274 Pkinase 7.3e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00274 K13412 - nnu:104596804 904.434