Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00265 ATGTTGCTCAGAACTTCAAATGAGGTGGTGTATAAAGTGGAACAGCTGCATCTCATGATCTTCTACATATTCCTTTCTCTACTAATAGCGACGGCAACTGCTAATATAGTCTTGATTGGGAACAATGCTTCTCTATCATTTGACGATATCGAAGCTAACTTTGCTCGGTCGATTAAAGGATCTGGGGAATGTGGGATCTTATATCTGGCTGAACCTCTTGATGCATGCTCTCCATTGACTAATAAAGTTGTTCCAGCCAAAGGTGCAAGTTCTCCGTTCGCGTTGATTGTTAGAGGAGGATGTACTTTTAAGGATAAAGTTAAAAGAGCACAAATAGCAGGGTTCAAAGCAGCTATTGTCTATGACAATGAAGATAGTGGTGTTTTGGTTGCAATGGCAGGAAGTTCAACTGGTATCAAAATACATGCTGTGTTTGTCTCCAAAGCCTCGGGTGAAGTACTTAAAAATTATACTGGATTTAACAGCATGGAGCTGTGGCTTATCCCAACATTTCAAAACTCAGCATGGTCAATCATGGCCATTTCTTTCATGTCCCTATTTGTCATGTCTGCTGTGCTGGCTACTTGCTTCTTTATTCGCAGACACCATGTAAGACGAGAATGGCCTCGAGCTCCTCGTGCTAGGGAGTTCCATGGGATGAGCAGCCGTTTAGTGAAAGCAATACCGAGTTTGATATTCACTGCAGTTTTAGAAGATAATTGTACTTCAGGAATGTGTGCCATATGCCTTGAAGACTATAGTGTTGGGGAGAAGCTCAGAGTACTGCCATGTCATCACAAGTTCCATGCTATCTGCGTGGATTGTTGGCTTACTATGTGGAGAACATTTTGTCCTGTCTGCAAGCGTGATGTGAGGATAAGCACAGGTAGTCCTCCAGCATCAGAGTGCACTCCATTACTTTCGTCAGACCCAGCTTCTCCGTCTTCCTCTGCCAGCTTGTCATCCGTGCTATCATCGTTAGCAGCATCATCAGCCATACAAATAGTACCAGCATCATCACAGTCCCCACCAGTTTCTGATGGTCACTCCCTCTCTAGCACTCATATGTTTCAGTCACTTCGGCCCTACAGGAACTCACGGCTAAGCAGAAGCTCTGTAGACCACTGGAACGGATCTTCCCAAAGATCCCATGCTTCCAACCTTCTTTCATCCCCATCCTTGGGCTACCCTTCTGTATCACCTCTTAATTCAACATACTTATCCCTGCATGTTCCCTCTGCATTGCAATGA 1251 0.4436 MLLRTSNEVVYKVEQLHLMIFYIFLSLLIATATANIVLIGNNASLSFDDIEANFARSIKGSGECGILYLAEPLDACSPLTNKVVPAKGASSPFALIVRGGCTFKDKVKRAQIAGFKAAIVYDNEDSGVLVAMAGSSTGIKIHAVFVSKASGEVLKNYTGFNSMELWLIPTFQNSAWSIMAISFMSLFVMSAVLATCFFIRRHHVRREWPRAPRAREFHGMSSRLVKAIPSLIFTAVLEDNCTSGMCAICLEDYSVGEKLRVLPCHHKFHAICVDCWLTMWRTFCPVCKRDVRISTGSPPASECTPLLSSDPASPSSSASLSSVLSSLAASSAIQIVPASSQSPPVSDGHSLSSTHMFQSLRPYRNSRLSRSSVDHWNGSSQRSHASNLLSSPSLGYPSVSPLNSTYLSLHVPSALQ* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00265 416 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 34 168 - -
Eupl03g00265 416 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 206 293 - -
Eupl03g00265 416 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 170 302 - -
Eupl03g00265 416 Gene3D - 29 163 - -
Eupl03g00265 416 SUPERFAMILY RING/U-box 237 302 - -
Eupl03g00265 416 Pfam Ring finger domain 245 288 IPR001841 -
Eupl03g00265 416 Pfam PA domain 87 153 IPR003137 -
Eupl03g00265 416 SUPERFAMILY PA domain 92 174 IPR046450 -
Eupl03g00265 416 SMART ring_2 246 287 IPR001841 -
Eupl03g00265 416 CDD PA_C_RZF_like 24 175 IPR044744 -
Eupl03g00265 416 ProSiteProfiles Zinc finger RING-type profile. 246 288 IPR001841 -
Eupl03g00265 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 293 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00265 Eupl-Chr3 8639709 8651477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00265 34 412 C3H Transcription Factor Family AT1G22670 44.784 3.87e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00265 K15692 - mnt:21390268 537.339