Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00257 ATGACATCACGCACCATCCCTCGCGAAGTCATCAACGACGACGATGAGTTTGATTGGGAGGCAGCGGTCAAAGAAATCGATGTCGCTTGCCAGGGCGCGTTGGCCTCAACCTCACGCGAAGAAGACTTTGCTAGTCCGGTGGTTCTCGGTGTTGAACCGGCATACATTCCCCGTCCTAAGCCGAAGAAACCCGGGGGTTCTCGGCAATCGACTCTCGATCAGTTCGTCGAAACGGTTGATCGGAGATCTTTTCTTGAGAATCGGCCTCTTAGTGCTCATAGAGTAGTACTTCACGATGACATTGGAGGCGATGACACGGTCTGCCACACCAACATTGATCTTGAGGCAGCAAAAACATGGATCTACCCAGTTAATGTTCCACTTCGCGACTACCAGCTTTCTATTACCAAGACAGCTTTATTTTCGAATACCTTGGTGGCATTGCCAACAGGACTCGGAAAGACTCTTATTGCCGCTGTTGTGATGTATAACTACTTCAGATGGTTTCCTGAAGGTAAAATAGTTTTTACTGCTCCTTCACGACCCCTTGTCATGCAACAAATTGAAGCATGCCATAATATTGTGGGGATACCTCAGGAATGGACAATTGATATGACAGGTCAGATGAGTCCTTCGAGAAGAGGATGCTTTTGGAAAGCTAAGCGAGTTTTCTTTGTCACTCCGCAAGTGTTTGAAAAAGATATTCAATCCGGCACATGTTTAGTGAAACACCTAGTGTGTGTGGTTATTGATGAGGCTCACCGGGCGATGGGGAATTATTCTTACTGTGTAGCAGTTCGTGAGTTGATGGCTGTACCAGTGCAGTTTAGGATATTAGCTTTAACAGCGACACCAGGATCAAAGCAACCGACTATCCAAAATGTTATTAATAACTTACATATTTCGAAGCTTGAATATCGCAATGAAAGTGACCATGATGTCAGCCCATATGTACACAACAGGAAGCTAGAATTAATAGAGGTTTCAATGGGCAAGGATGCTATTGGTATAAATAATCTGCTCTTGGAAGCGATACAGCCATTTGTGGCTAGGCTTTGTGCATTGGGAGTGCTCCATAATAGAGACTTTCAAACGATTTTTCTACAATGTAAATTTTTGAAAGGCTTGCATGAGTTGAGCCCGTGCGATTTACTTAATTCTAGGGATAAATTTCGTCAAGCACCTCCATTAGATCTTCCTCACATGAAATATGGAGAAGTAGAAGGATATTTTGGAGTTCTTATTACACTTTACCATATCCGTAAGTTGCTTTCAAGCCATGGCATTAGACCAGCATCTGAGATGCTTGAAGAAAAGTTGCAACAGGGGTTTTTTGCAAGACTTATGAGTAGGAATGAAGTCATATGGAAGGCAAAACTCTTAATGCAGCAAAGCTTGTCTCATGGTGCACCAAATCCCAAATTGACAAAAATGATAGAAATACTGATTGATCATTTCAAAACAAATGATCCGAAGACCTCAAGAGTTATCATTTTCTCAAATTTTAGGGGAAGTGTCAGGGACATATTGGATTCATTATCAAATATTGGGGAGTTAGTTAAAGCTACGGAGTTTATTGGTCAAAGCTCAGGAAAAACTTTGAAAGGCCAGACACAAAAAGTACAACAAGCTGTTTTACAGAAATTTAGGGCTGGTGGATATAATGTCATTGTTGCAACTTCAATTGGTGAAGAAGGTCTGGATATAATGGAAGTTGATCTCGTGATATGTTTTGATGCCAACGTCTCACCTTTGAGAATGATCCAACGCATGGGAAGGACAGGAAGGAAGCACGATGGACGAGTTGTTATTTTAGCTTGTGAAGGGTCAGAGCTGAAGGGATACTTACGAAAGCAAGCGAACAGCAAGGCTGTAAGGAAACACATGCGCAATGGGGGAATGAATAGCTTTGATTTCCATTCCAGTCCTAGGATGATTCCACATATTTGCAGACCAGAAGTTCAGTTTGTTGAGTTGTCGATTGAACAATTTGTTCCCCGTGGAAGGAAAGTGAAAGATGACCCTAAGCACAGACCCACATTTATCGACAAAGTTTCAGATGCTGAAACTGGATTAATTGCTAAGTACTTTCACCATTCCGGAGAAGATACTTGGAAACCTTCTCTTATTGCCTTCCCCCACTTCCAGGGGTTTCCTTCAAGAGTGCATAAAGTAATGCATTCTTTCAGAACGGGAATGCTGATTGACACTATGCAACGTCTGCAAGGACTATCGTTTGTTAAAGATAATAAAACTCTCCCAGTTGAGGGGAAGATCTTTTCAAGTCAATGCTTGGAGGCTGAAACTACTGCACAAAATGATCAAAATCATAAAGATTCAATTAGTTTCCATGACTCCCCAAAAGCATACTCACAGAGAAAAATATCAGATATCGAAGCATCACCTGCAGTGGTCTCAAGTTGTAAAGAGGAGCATTATATGCCAAACTTCCCAAGCCAGAATCCTCCTATCCATTGCTTCCTTTTTGGGACAGATTTTGTATCTGTAAATGCTCTTGGAATGGTATCAATTGCATCTGTCCCTGCCCTTCCTTTTGTGAAAGCAACTCCACCTTGTAAAAGCACAACAGCAAACAGTATAGAGCTATTGAATTGTGTGAAGCAAAGTTCCAGTCCTTCTAGAACTTTACCTGGACATTACAATGAGCTTAGTATGCAGGCTATAGCTATTGCTAATTTAACAAATTCTGATGAGACAAGATGCATAAATCGCAAGTCTGTGTTAAGTTCTAGGTTGTGCAACTCTGATATATATCAAGAGTCAACACTGCATGGGGTTGAGAGAATTGTTCTCTTGACACCAAGATCGAAGGGAAATTTGGCCAATTTGGAAGATGGCACTTTTGAGACACCTGCTAGTACAAGAAAGAAAATTCCAATATTACTAGTTAATGAATCTGATTTCAGAGATATGGAGATGAGCCCTCGGCTAACTAATATGATTGAAAAAGGTGTCGTTCCAGAGTCTCCTATAGCTGAGACTGTTCATTATTCTTCCCCAAAAGAGCACAGGGTTTGCATATGTGCTAGGTCCAAGAATGAAAACTGTGGATTACATCCAAACTGTCCCACAGATGTACAAGGGAATAAAATTCGTGATGATAAGGCTGTGTATTCTGCAGAGCTATCCAATTTGGAAGGGAGTAATTGGTCTCTTTCTCCAGCACATGTTTCATCTGCCAAGTTGTGTACTGGCCTGGCATCAAAGAATTTTAGTTCAGAGAAGAATGAAAAGGACAAGGTGAACAATAGTATCGGTGCAAGAGGATATGTCTTTGCTTCTCCTATCACTGAGGAAATTCACACTCCCTTGGTCAAGATGAACAATAGTGCCAATGCAAGAGGATGCATCTCCGGTGCTCATATTAATGACGAAATTCACACTCCATTTGTTAATCTAACTAACAGTAGCTGTAGTAAAGACTGGCAACTGAGTTCTGGCGAGGCATCAAAAAATGTTCAGCAGGCACACAAGTTTAAAAGGTTGCGCAAGTATGGAGATTCTGAAAAACTGGCGTCTTCCAAAACTATGAAAGAAAATTTCAGTGTTCCTATGGCAAATCTCAGCAGATCTTTTACTAGAGCCAGATCTAGTCCAGTGAAGCATACCAAAGGTAAGCAGAAGCCAGTGACCCACGTCAAAGCCTTCATCGAAGATGAGGCCGAGGTATCTTCAGATACTGAAGTATCTGATGATGAGGAAGAAGACAAGGACACCAATTCATATGATGATAGTTTCATAGATGACAGGATACATCCTACTGCAGCAAGTACTCAAGCAGAAGCTAGGGGAAGTGACATGATGGCAATTTACAGGCGTTCTTTGCTCAGTCAACCACCAATTGAGAGTCAGCCGAACTCTTCCACTGACTTAAGTCCCGACTTTCTGCCTTATAGTAGCAAAACTGCTGAAACTGGAAGTTGTTCTTTGAGAAAAATGAATTATTCTCTTCAGACACCTCGAACAGGTTTACAGTCTGCTAATCGGTCTGCTGTCAGGCATTCCGTTTCCTGTCAAATGGACCCAGATAGGATCTCTCTAGTAGCCATGCCAGGTGAAACCTGTGGGGTCCTAATAGAAGAAAGCAAGATGGAGAGCAGAAAGAGAAAACTAAGTTTTTATCAACTTGAGTCTGGTTCTGCAACTGGCTTACATCAAGAACAGTTATTTCAGTCAGAGACCACAGGCAGATCATCCCAGCAGTGTCAATCTAAGAATGAGCTTAACGAGGATGTGTTCTATGACGATCAATTTTATGAGGGTCTTGATCTTGATGCACTGGAGGCACAAGCTACTAAACTTCTGGGGTACAAGTCAGAGTTGCAAATGGAGAGAAAACATGTTATTCCAATTCCTTCCACAGAGGAGAATCTTGGTCTCTTGAATTCTCCATCATTTGATCTTGGGATTTGA 4434 0.4177 MTSRTIPREVINDDDEFDWEAAVKEIDVACQGALASTSREEDFASPVVLGVEPAYIPRPKPKKPGGSRQSTLDQFVETVDRRSFLENRPLSAHRVVLHDDIGGDDTVCHTNIDLEAAKTWIYPVNVPLRDYQLSITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQMSPSRRGCFWKAKRVFFVTPQVFEKDIQSGTCLVKHLVCVVIDEAHRAMGNYSYCVAVRELMAVPVQFRILALTATPGSKQPTIQNVINNLHISKLEYRNESDHDVSPYVHNRKLELIEVSMGKDAIGINNLLLEAIQPFVARLCALGVLHNRDFQTIFLQCKFLKGLHELSPCDLLNSRDKFRQAPPLDLPHMKYGEVEGYFGVLITLYHIRKLLSSHGIRPASEMLEEKLQQGFFARLMSRNEVIWKAKLLMQQSLSHGAPNPKLTKMIEILIDHFKTNDPKTSRVIIFSNFRGSVRDILDSLSNIGELVKATEFIGQSSGKTLKGQTQKVQQAVLQKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVVILACEGSELKGYLRKQANSKAVRKHMRNGGMNSFDFHSSPRMIPHICRPEVQFVELSIEQFVPRGRKVKDDPKHRPTFIDKVSDAETGLIAKYFHHSGEDTWKPSLIAFPHFQGFPSRVHKVMHSFRTGMLIDTMQRLQGLSFVKDNKTLPVEGKIFSSQCLEAETTAQNDQNHKDSISFHDSPKAYSQRKISDIEASPAVVSSCKEEHYMPNFPSQNPPIHCFLFGTDFVSVNALGMVSIASVPALPFVKATPPCKSTTANSIELLNCVKQSSSPSRTLPGHYNELSMQAIAIANLTNSDETRCINRKSVLSSRLCNSDIYQESTLHGVERIVLLTPRSKGNLANLEDGTFETPASTRKKIPILLVNESDFRDMEMSPRLTNMIEKGVVPESPIAETVHYSSPKEHRVCICARSKNENCGLHPNCPTDVQGNKIRDDKAVYSAELSNLEGSNWSLSPAHVSSAKLCTGLASKNFSSEKNEKDKVNNSIGARGYVFASPITEEIHTPLVKMNNSANARGCISGAHINDEIHTPFVNLTNSSCSKDWQLSSGEASKNVQQAHKFKRLRKYGDSEKLASSKTMKENFSVPMANLSRSFTRARSSPVKHTKGKQKPVTHVKAFIEDEAEVSSDTEVSDDEEEDKDTNSYDDSFIDDRIHPTAASTQAEARGSDMMAIYRRSLLSQPPIESQPNSSTDLSPDFLPYSSKTAETGSCSLRKMNYSLQTPRTGLQSANRSAVRHSVSCQMDPDRISLVAMPGETCGVLIEESKMESRKRKLSFYQLESGSATGLHQEQLFQSETTGRSSQQCQSKNELNEDVFYDDQFYEGLDLDALEAQATKLLGYKSELQMERKHVIPIPSTEENLGLLNSPSFDLGI* 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00257 1477 MobiDBLite consensus disorder prediction 1197 1271 - -
Eupl03g00257 1477 SMART helicmild6 508 598 IPR001650 -
Eupl03g00257 1477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 303 IPR014001 -
Eupl03g00257 1477 SMART ultradead3 124 321 IPR014001 -
Eupl03g00257 1477 Pfam Helicase conserved C-terminal domain 480 597 IPR001650 -
Eupl03g00257 1477 Gene3D - 124 318 IPR027417 -
Eupl03g00257 1477 MobiDBLite consensus disorder prediction 1229 1249 - -
Eupl03g00257 1477 FunFam ATP-dependent RNA helicase, putative 462 632 - -
Eupl03g00257 1477 CDD FANCM_ID 339 440 IPR039686 GO:0006281|GO:0043138
Eupl03g00257 1477 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 9 1454 - -
Eupl03g00257 1477 FunFam Fanconi anemia, complementation group M 123 318 - -
Eupl03g00257 1477 Gene3D - 463 632 IPR027417 -
Eupl03g00257 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 611 IPR027417 -
Eupl03g00257 1477 Pfam Type III restriction enzyme, res subunit 141 285 IPR006935 GO:0003677|GO:0005524|GO:0016787
Eupl03g00257 1477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 640 IPR001650 -
Eupl03g00257 1477 CDD SF2_C_FANCM_Hef 473 606 - -
Eupl03g00257 1477 CDD DEXDc_FANCM 126 307 IPR044749 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00257 Eupl-Chr3 8094880 8151499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00257 479 625 Eukaryotic Initiation Factors Gene Family AT3G13920 26.829 1.18e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00257 K10896 - nnu:104596846 1818.51