Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00250 ATGGGTCGTTCTCCTTGCTGTGAGAAATCCCACACAAACAAAGGTGCATGGACCAAAGAAGAAGATCAGCGCCTCATCAATTACATCAGAGCTCATGGTGAAGGCTGTTGGAGATCCCTCCCCAAAGCTGCAGGTTTGCTTCGCTGTGGTAAAAGTTGTAGACTACGATGGATAAACTATCTCCGACCTGATCTCAAAAGAGGAAATTTTACAGAAGAAGAAGACGAACTCATCATCAAACTCCACAGCTTACTTGGAAATAAATGGTCTCTCATTGCTGGACGTTTACCTGGAAGAACAGATAATGAGATCAAGAATTACTGGAATACCCACATTAAACGGAAACTCATGAGCCGGGGTCTCGATCCTCAGACCCACCGACCCATCAACAACACCACCAGTTCATACATCTTAAGTTCTTCCGGCACCGATTCAGCGGAAGAGGCAAACAGTAGCAGCGGTACAACAGAGGAAGATCAACAACCACAACAACATCAGCAACAATACTCAGAACTCAATCTTGACCTTTCGATAAGTCTTCCCTTTCAATCTCAACCAGTTTCGACGAACATAGACGAATCAAAGCAACAGCAACTCTCGTTCCAAGTTTTTGCTACACCACAGCCAATCATCACTCAAGCTATTTGTTTGTGTTGTCATCTAGGGTTTGGAAGTAGCGAAGCTTGTAATTGCCATCTTCGTAGATTTTATAGACCGTTGGATTCTTAG 729 0.439 MGRSPCCEKSHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLMSRGLDPQTHRPINNTTSSYILSSSGTDSAEEANSSSGTTEEDQQPQQHQQQYSELNLDLSISLPFQSQPVSTNIDESKQQQLSFQVFATPQPIITQAICLCCHLGFGSSEACNCHLRRFYRPLDS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00250 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl03g00250 242 Gene3D - 14 66 - -
Eupl03g00250 242 CDD SANT 69 112 IPR001005 -
Eupl03g00250 242 Gene3D - 69 137 - -
Eupl03g00250 242 MobiDBLite consensus disorder prediction 119 168 - -
Eupl03g00250 242 CDD SANT 16 61 IPR001005 -
Eupl03g00250 242 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Eupl03g00250 242 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl03g00250 242 FunFam Myb transcription factor 68 136 - -
Eupl03g00250 242 FunFam MYB-related transcription factor 13 66 - -
Eupl03g00250 242 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl03g00250 242 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 184 - -
Eupl03g00250 242 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Eupl03g00250 242 SMART sant 13 63 IPR001005 -
Eupl03g00250 242 SMART sant 66 114 IPR001005 -
Eupl03g00250 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl03g00250 242 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl03g00250 242 MobiDBLite consensus disorder prediction 124 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00250 Eupl-Chr3 7916439 7917950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00250 1 231 MYB Transcription Factor Family AT4G38620 56.420 1.00e-93 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl03g00250 Myb_DNA-binding 8.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00250 K09422 - ming:122066430 370.548