Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00245 ATGAAAGAGGAAATGGACTTGGGTGTGGTGCCGTACGGTTGTCACAATGGAAGCAGCAAAATCGATAGCAAGTTTTGTGGTAATGGTGATCAAGCGAAGGAAAAACCGGTCGAGAAGACACGGCGGTTCGTGGTTGAACCGGTGACGACACTAACAACAGACGGCATGATAGCCGGGAAGATGGTCAGGTACAGGGAGTGTATGAGGAACCATGCGGCATCGATCGGAGGCCACACTAATGACGGATGTGGTGAGTTCATGCCAGGAGGGGAAGAAGGCACCCGAGAGGTTCTAAGTTGCGCAGCCTGCGGCTGCCACCGCAATTTTCATCGAAAGGAGATGCCCGGTGGCGGTGGAATCGGTGGATGCGTAGATAACCACCTTCTCCACCCCCCACCACCACCAACACCTATCGTACTATACAACGCGGAGAAGAATAATATAGGAGGGTTCCTTTCTCTTTCAGCAGTTCCACTACGACATCCTCAACCTCATCATCGGAATAGCGGTGGGATATTTGGAGTCGTTGATGTTCGGAATCTGAACGATAGAAAGGATGATCGACGGTCAGAAACGCCGGAGGAACGAGGGGAGGTTAATGTGGGGAGGAGTAAGAGATTTAGGACAAAGTTTACACAGGAGCAGAAGGAAAAGATGATGGAGTTCGCTGAGAGAATGGGGTGGAGGATACAGAAACAAGATGATGTTGCACTTAACCAGTTCTGTTTGGACATTGGGGTCAAGCGTAGCGTCCTTAAGGTCTGGATGCACAACAACAAAAGCACACTCCGGAAGAAAGAAAATGCAGCAACACCACCACCAGCAGCACCACCACCACCATCCATCGGCGCTGTTTGA 858 0.5082 MKEEMDLGVVPYGCHNGSSKIDSKFCGNGDQAKEKPVEKTRRFVVEPVTTLTTDGMIAGKMVRYRECMRNHAASIGGHTNDGCGEFMPGGEEGTREVLSCAACGCHRNFHRKEMPGGGGIGGCVDNHLLHPPPPPTPIVLYNAEKNNIGGFLSLSAVPLRHPQPHHRNSGGIFGVVDVRNLNDRKDDRRSETPEERGEVNVGRSKRFRTKFTQEQKEKMMEFAERMGWRIQKQDDVALNQFCLDIGVKRSVLKVWMHNNKSTLRKKENAATPPPAAPPPPSIGAV* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00245 285 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 262 - -
Eupl03g00245 285 MobiDBLite consensus disorder prediction 184 203 - -
Eupl03g00245 285 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Eupl03g00245 285 Gene3D - 189 265 - -
Eupl03g00245 285 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 113 IPR006456 -
Eupl03g00245 285 FunFam Zinc-finger homeodomain protein 2 191 265 - -
Eupl03g00245 285 Pfam ZF-HD protein dimerisation region 62 114 IPR006456 -
Eupl03g00245 285 MobiDBLite consensus disorder prediction 263 285 - -
Eupl03g00245 285 NCBIfam homeobox domain, ZF-HD class 205 260 IPR006455 -
Eupl03g00245 285 SUPERFAMILY Homeodomain-like 195 265 IPR009057 -
Eupl03g00245 285 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00245 Eupl-Chr3 7811341 7812416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00245 62 263 ZF-HD Transcription Factor Family AT4G24660 49.010 2.39e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl03g00245 ZF-HD_dimer 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00245 - - nnu:104589415 265.388