Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00220 ATGGCCTTTAAGAGGGCGTTTGTCAGCCTTTGCAGCTTTTGTCTGAAATGTACCGTAAATTTTGTTGTCTTGGCCAGACATGAATTCAGAAGTCGCCACCTTTACATGAGTGGGGCCAAATGTGTGGAAATGCAAAATACGAGTTGCGCGAACAACCTCGGCCTCACCACACATCTACTCAGAACCTGGCGTGTTGTAGAGAAGAGAAAAGGGCTTCTCTCTGTGAAACGAAAAGAGCGTGAAGAGACAACCCAGCAATCTCAGCTTCTGATGCAACAACAACAACGGATGGGTTGTGGTGGTGATGGCGGTGGGGGTTGTGGGGGTGGTGATAGTGGTGGTGGAGGAGGAGGTGGTGGTGGAGTTGAACCCAACAGAAGTCTCGCCCGTTTCCGGTCGGCTCCGGCTTCATGGTTGGACACCTTACTACAAGACGACGATCCAGTACCACAAAACCAATGCCTGCCTCAGCTTCCTAATCTCAGAAACTCTACTAACTATGGTTCCAACGAGGCAGATCCCACCACCACCTTCTTCGACACAACCAGCGGCGCTGCCACCTCCTCCGCCTTTGGTTTCCTTAGACAAAACAGCTCTCCAGCGGAACTTCTTGGTCAGCTAAATTCACCTTCAGCTGTTGGGTCTGATGGATTCTTCTCAAACTTCGAACTTTCCGGCAATTACGATTACCAACTCTCCTTACTTGACATCCCAACTAATAAACGAGTGAGAGAGTCGATACCTGAACAAGAACCAGCAAAATTTTCATCCCAATTGAAAGGGGAGCAAAGTCGGACGGCTAGTTTTTCAGATATGGAGATGGACAAGCTCTTCGAGGATTCTGTTCCTTTCAGGGTTCGTGCGAAACGTGGTTGCGCAACTCATCCTCGCAGTATCGCAGAGAGGGTTCGGAGAACCCGAATCAGTGATCGGATAAGAAAGCTTCAGGAACTTGTACCCAATATGGATAAGCAAACCAATACTGCAGACATGTTAGAGGAAGCAGTTGAATATGTCAAGTTCCTACAGAAACAGATTCAGAGCTCTTTCTTAAGACCATGCATGGCGTTCTTAAGATGGCAATCAAGATCCTTGTTTCTGATACCGTTCAAGCCATGGGGGATCATAATGAACCTTTATCCTATAAAATATCCATGGAGGTACATATTCTTCACACTTTAA 1182 0.4729 MAFKRAFVSLCSFCLKCTVNFVVLARHEFRSRHLYMSGAKCVEMQNTSCANNLGLTTHLLRTWRVVEKRKGLLSVKRKEREETTQQSQLLMQQQQRMGCGGDGGGGCGGGDSGGGGGGGGGVEPNRSLARFRSAPASWLDTLLQDDDPVPQNQCLPQLPNLRNSTNYGSNEADPTTTFFDTTSGAATSSAFGFLRQNSSPAELLGQLNSPSAVGSDGFFSNFELSGNYDYQLSLLDIPTNKRVRESIPEQEPAKFSSQLKGEQSRTASFSDMEMDKLFEDSVPFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKFLQKQIQSSFLRPCMAFLRWQSRSLFLIPFKPWGIIMNLYPIKYPWRYIFFTL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00220 393 SMART finulus 298 348 IPR011598 GO:0046983
Eupl03g00220 393 MobiDBLite consensus disorder prediction 98 126 - -
Eupl03g00220 393 Pfam Helix-loop-helix DNA-binding domain 297 343 IPR011598 GO:0046983
Eupl03g00220 393 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 134 369 - -
Eupl03g00220 393 CDD bHLH_AtbHLH_like 297 348 IPR045239 -
Eupl03g00220 393 Gene3D - 293 352 IPR036638 GO:0046983
Eupl03g00220 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 342 IPR011598 GO:0046983
Eupl03g00220 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 349 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00220 Eupl-Chr3 7136444 7149255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00220 192 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 64.417 3.56e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl03g00220 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00220 - - nnu:104586975 280.796