Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00202 ATGCCTCTCTTTAAGAGAAAGCCTTTTCCCCTGGTGGAAACACCACAGGATTTGGAGCCTCATGAGCTTCTTTTCCAAGTTCGTTTCACGAAAGAGATATTTAGGGATTATCAAGAGTATTTGAACCGAATAAATCTCTATCGTCAGAGAGTCTGGACTTGTAAAGTTACTGGGAAAACTAACTTAACTTATGAAGAGGCTTTGGTCTCAGAACGTCGTGCAATGGAGAAGGTTCAACAGTTTCCAAAAGAACTAACGGCATCTGTACTGCATATGATCCAATTCAGTACACTCAGCTTAAAGGATCTTATCAACACAATATGTACAAAGTTGCAAGAACGCTTGTTGGAGGGCGTGGAGTTGTATGGTAGGAAAGAGCAATCTGTTTGCCCATGCAAAATACTAAAGGTTTTGGAGGATGATGTTGACAAAATCCGGTATGAAGTGGGATGGCTTGGTAAAGATAAGAAAGTAACTGGTAGTTCAGTAGTAAATGCAGATGATCTGATTCGGAAGAAGCTTCCATTCAGTAGAGGCCTACTAAAGTCTTTTATTAGGGAATCTACTTCATATAGTTCTCCATGGGTGGTCCAAGATAAATTGGCAAGGAAGCATGGAATCTTGACTGAACCTCCAAAGGAGTTATTAGAAAAAATTTCCATTCAGGGAGAAGGTATTGGCAGCAACAAAGTGAGAAGGAAAGATAACAAAAACAGGAAAAACATCTCGGATAGTAAACAAGGTGAAATCAGCAAAAATAAAAGGAAAAAACGGGAAACTGAGAACTCTGAAGGCTTGACCATGATGAAGAAAGCAAAGAAAGAAGATGAAAAGGCAAAGGAAGAACCCATTAAATACCCAATTGACGATCTTCTAGTGCAGCCTGGTGCAAATGATCCAGTTTTCAGTGATCGCCCTTCTCCATCAAGAGATTTTGGTGTTCCAATGGATTGTGTTGGTGATCTTCTGATGGTTTGGGATTTTTTCTCTTCTTTTGCCAGGTTGTTGAACTTGTGGCCATTCTCTCTTGAAGATTTTGAGAATGCAATCTGCCATAAGCTCAGCAATCTCTTTCTCATTGTGGAATCGCATTCAGCAATTCTTCACTTGCTTATTAAAGACGAAGGTGAATATTTCAAAGCCGTAAAGGGGAAAAAGCGGAAATCAAAGATTACATTAATTAATTGGACAGAATATTTATGCGACTTCCTGGAGATGGAAGATATACCTGAACTATCTGCTCACATTGCAACTATAAAACGGGGTCACTATGGTCTTTTAGATACTCGTGCTAAATTGGGCATCCTTCGGGAACTGGTTGCTCGGGCCCTATCAACCAATGCTATTAGGGAGCAATTGGATGAGTATATTGAACAGCGGCAGGCACTTTTTGCAACAAAGAGGGAGGAAGCAATAGTGGAAGCTAGAAAGAGGAGAGAAGAGAAGGGACTTCTGAAAGCTGAATCTCACACCAAGGAAGTAAATAGGGAAATAGTCTGGAGAATGAGGGAGGCAACTTGCACATTTCTGAGAATGGTTATGACAAGGAACAGAATGGGGATGTTCTAG 1569 0.4047 MPLFKRKPFPLVETPQDLEPHELLFQVRFTKEIFRDYQEYLNRINLYRQRVWTCKVTGKTNLTYEEALVSERRAMEKVQQFPKELTASVLHMIQFSTLSLKDLINTICTKLQERLLEGVELYGRKEQSVCPCKILKVLEDDVDKIRYEVGWLGKDKKVTGSSVVNADDLIRKKLPFSRGLLKSFIRESTSYSSPWVVQDKLARKHGILTEPPKELLEKISIQGEGIGSNKVRRKDNKNRKNISDSKQGEISKNKRKKRETENSEGLTMMKKAKKEDEKAKEEPIKYPIDDLLVQPGANDPVFSDRPSPSRDFGVPMDCVGDLLMVWDFFSSFARLLNLWPFSLEDFENAICHKLSNLFLIVESHSAILHLLIKDEGEYFKAVKGKKRKSKITLINWTEYLCDFLEMEDIPELSAHIATIKRGHYGLLDTRAKLGILRELVARALSTNAIREQLDEYIEQRQALFATKREEAIVEARKRREEKGLLKAESHTKEVNREIVWRMREATCTFLRMVMTRNRMGMF* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00202 522 SMART testlast3 316 377 IPR018501 -
Eupl03g00202 522 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Eupl03g00202 522 MobiDBLite consensus disorder prediction 228 281 - -
Eupl03g00202 522 MobiDBLite consensus disorder prediction 227 281 - -
Eupl03g00202 522 ProSiteProfiles DDT domain profile. 316 377 IPR018501 -
Eupl03g00202 522 Pfam DDT domain 317 374 IPR018501 -
Eupl03g00202 522 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 495 - -
Eupl03g00202 522 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 118 IPR013136 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00202 317 374 Homeobox Transcription Factor Family AT1G28420 43.103 7.78e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Eupl03g00202 WAC_Acf1_DNA_bd 9.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00202 - - nnu:104588964 721.85