Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00173 CACAGAGAGGGGAGCGGAGCGGCGCTTTTAACATTTCAACAAGAGCGTTCGAGAGGGAGAATCAAAGAGGAAAGAAGCATGTCTCATCGCAAGTTTGAGCACCCAAGACATGGCTCGTTGGGATTTCTTCCTAGAAAAAGAGCCGCTCGTCATAGAGGAAAAGTGAAGTCCTTTCCCAAGGATGATCCAACAAAGCCCTGTAGACTGACTGCATTTCTGGGATACAAGGCTGGGATGACTCATATTGTCAGAGATGTTGACAAACCTGGATCAAAGCTCCATAAGAAAGAGGCATGTGAGGCAGTGACAATTATAGAAGCACCGCCTATGGTTGTTGTCGGAGTTGTTGGTTATCTAAAGACACCCCGTGGCCTTCGTTCCTTGAATACTGTTTGGGCCCAGCATCTTAACGAGGAGGTAAAGAGGAGATTTTATAAGAATTGGTGCAAGTCCAAGAAGAAGGCATTCACCAAGTATTCGAAGAAGTATGAAACCGAAGAAGGGAAGAAGGATATTCATGTCCAGTTAGAAAAAATGAAGAAATACTGTACGGTCATTCGTGTTTTGGCTCATACCCAGATTAGAAAGATGAAGGGGCTGAAGCAGAAGAAGGCCCACCTGATGGAGATCCAGGTGAATGGTGGAGATATTGCTCAAAAGGTTGATTATGCTTACAGTTTCTTTGAGAAGGAGATCCCCATCGATGCCATATTTCAGAAGGATGAGATGATCGATATCATTGGGGTGACCAAAGGTAAGGGGTACGAGGGTGTGGTGACTCGATGGGGTGTCACCCGCCTCCCTCGCAAGACCCACAGGGGCCTGCGCAAGGTAGCCTGCATAGGTGCTTGGCATCCAGCTAGGGTGTCGTTCACAGTTGCCAGAGCTGGACAGAATGGGTACCACCATCGCACGGAGATGAACAAGAAGATTTACAAGCTTGGGAAGGCTGGGCAGGAGTCTCATACTGCTGACACTGAGTTTGACAGGACTGAGAAGGACATAACGCCTATTGGAGGTTTCCCCCACTATGGGGTGGTGAAGGATGATTACCTGCTGATAAAGGGTTGCTGCGTGGGGCCGAAGAAGCGTGTTGTCACCCTGAGGCAATCGCTTCTGAAGCAGACCTCTAGGGTTGCCATGGAGGAGATTAAGCTCAAATTCATCGACACCTCCTCAAAGTTTGGCCATGGTCGGTTCCAGACCACACAGGAGAAGGCCAAGTTCTATGGACGTCTCAAAGCATAG 1248 0.4856 HREGSGAALLTFQQERSRGRIKEERSMSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPTKPCRLTAFLGYKAGMTHIVRDVDKPGSKLHKKEACEAVTIIEAPPMVVVGVVGYLKTPRGLRSLNTVWAQHLNEEVKRRFYKNWCKSKKKAFTKYSKKYETEEGKKDIHVQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGDIAQKVDYAYSFFEKEIPIDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAGQESHTADTEFDRTEKDITPIGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQSLLKQTSRVAMEEIKLKFIDTSSKFGHGRFQTTQEKAKFYGRLKA* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00173 415 Gene3D Ribosomal protein L3, domain 3 27 300 IPR044892 -
Eupl03g00173 415 Gene3D Translation factors 70 411 - -
Eupl03g00173 415 FunFam 60S ribosomal protein L3 109 233 - -
Eupl03g00173 415 FunFam 60S ribosomal protein L3 70 170 - -
Eupl03g00173 415 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 27 410 IPR045077 GO:0003735|GO:0005840|GO:0006412
Eupl03g00173 415 FunFam Ribosomal protein L3 291 415 - -
Eupl03g00173 415 ProSitePatterns Ribosomal protein L3 signature. 238 261 IPR019926 -
Eupl03g00173 415 FunFam 60S ribosomal protein L3 252 300 - -
Eupl03g00173 415 SUPERFAMILY Translation proteins 30 396 IPR009000 -
Eupl03g00173 415 MobiDBLite consensus disorder prediction 16 40 - -
Eupl03g00173 415 Gene3D - 109 233 - -
Eupl03g00173 415 Pfam Ribosomal protein L3 27 396 IPR000597 GO:0003735|GO:0005840|GO:0006412
Eupl03g00173 415 MobiDBLite consensus disorder prediction 1 40 - -
Eupl03g00173 415 FunFam 60S ribosomal protein L3 27 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00173 Eupl-Chr3 5376337 5382163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00173 27 412 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 88.342 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00173 K02925 - vvi:100267716 756.133