Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00154 ATGAGTCGTTTGGAAGAAGGGAGCTCTAGTGGATCAAGTGAGAAGAAGTATAAAGGAGTTCGACGTCGGAAATGGGGGAAGTGGGTATCGGAAATCAGAGTCCCAGGTACACAAGATCGGCTATGGTTGGGCTCATACTCAACACCAGAAGCTGCAGCAGTAGCTCACGACACCGCCTTGTTTTGTCTACGAGGTCCTTCTCTGAAACGACAACTCAATTTCCCAATGTGTCTACCGGTATGTCTGCGTACCGATATGTCGCCAAGGTCAGTACAGAAGGCAGCGTCAAATGCCGGCATGGCGGTCGACGTCGAGTTGGCCAACAAGGTGCCAGAAAGTGATGAAAAGCTGATTCAAATTGAAGTGATTCAAGGTCTGGAGAGCCAAATTTGGGAGGATGAAGATGATATTTCTAAGAATTATTGGGGTAGTGATTTGATAGAAGGAGAGGCCTTAAGTATTTCCATTGATGACATGGAGATATGTTTTTAG 492 0.4634 MSRLEEGSSSGSSEKKYKGVRRRKWGKWVSEIRVPGTQDRLWLGSYSTPEAAAVAHDTALFCLRGPSLKRQLNFPMCLPVCLRTDMSPRSVQKAASNAGMAVDVELANKVPESDEKLIQIEVIQGLESQIWEDEDDISKNYWGSDLIEGEALSISIDDMEICF* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00154 163 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Eupl03g00154 163 SUPERFAMILY DNA-binding domain 16 76 IPR016177 GO:0003677
Eupl03g00154 163 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Eupl03g00154 163 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Eupl03g00154 163 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Eupl03g00154 163 ProSiteProfiles AP2/ERF domain profile. 16 75 IPR001471 GO:0003700|GO:0006355
Eupl03g00154 163 Gene3D AP2/ERF domain 15 77 IPR036955 GO:0003700|GO:0006355
Eupl03g00154 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 109 - -
Eupl03g00154 163 SMART rav1_2 16 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00154 Eupl-Chr3 4698374 4699285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00154 9 110 AP2-EREBP Transcription Factor Family AT1G22810 63.725 2.62e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl03g00154 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00154 - - nnu:104586477 198.749