Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00117 ATGGGTTTCCTTGTAGTGTTCTGCATCGTTGTTTCAGCTGTTCTCTCTCCCCACTCGGCTGCTTTCGACACTCTTTCCGACAAGGCGGCCTTGCTCTCATTCAAGACTCTAATAACAGCTGACCCTTCCAACACCCTATCCACATGGAACAGCAACTTGAGTCTTTGCAATTGGACGGGAGTCATGTGTGATGAAATCAGGCAAAGAGTCGTCGGCCTAGATCTTAAGGGCCTTGGATTATCAGGCACCATTAGCCCATATCTTGCCAATCTCTCTTACCTTAATTCTCTTCAGCTACAAAAGAATCAATTTGAGGGAACCATTCCTGATCAAATAGGTGATCTTTCTCGCTTGCGTGTTCTAAACATGAGTGCAAACCTCATCCAAGGTACAATCCCACCGAACATCAGCAGATGTTCCGAGCTCATAGTCCTAGACTTAACCGGAAATGAGATCTCAGGTGTTATTCCTATAGAGCTCGGTCGTCTTTCGAAGCTCCAAGAACTAAAGATGAACAGAAACCGGCTTTCAGGTGCAATTCCTCCATCCATTGGAAACCTCTCATCACTCACTTCATTAAAATTAGCCACCAATCTTCTTAGTGGAAGCATACCAAGTGAGATAGGCCGTCTTCAAAACTTACAAAAACTCCAACTCTCCATTAACAATCTCACAGGAATTGTTCCTCTGTCCCTATACAACATTTCTTCCCTTGTCTCTATTGAATTAGCCTCAAATCAGCTATGGGGTGAAATTCCAAGTGATGTCGGCGATACGCTTCCAAATCTATTAGAAATTAATTTTGGCGTAAATGATTTCACTGGTCCATTTCCTGCATCACTACATAACCTCACCAAGATCCAAAGCATTCGGATGGAACATAATTTTCTTGTTGGATCAGTTCCACCGGGACTAGGGAATCTCCCCGACCTCAGAGTGTATGATATTGGGTTCAATCGGATCGTAAGCTCTGGCGAAGCTGGACTGAATTTCATCACATCTTTGACAAACAGCACCCATCTTGAATTCCTTGCATTGGATGACAATCTTCTAGAGGGTGTGATTCCAGAATCCATTGGCAATCTTTCAACCCTTCTCACCAAATTATATATGGGTGGGAATCGGAGGATCTACGGCAATATTCCTGCTTCGATCGGTCGGCTTAGAAGCTTGGCTTTGCTAAATTTAAGCCATAATTCATTGTCCGGTGAAATTCCATCGGAAATTGGCCAGCTCAAGGAACTGCAGCTGCTGGGTTTGGCTGGAAACAAAATAGCAGGTGAAATTCCTGCCTCCTTAGGAAATCTGAGCAAATTGAATGAGCTTGAATTGTTTGGGAATGAGCTGGTGGGAAGAATACCAACCACTTTTAGTAACTTTCAAAGCTTACTTTCGTTGGATCTATCCAAAAATCGGCTCAATGGAAGCATACCCAAAGAAGTTTTCGGGCTCTCGAGTTTGAGCATTCTTCTCAACTTGTCAAAAAATTCTCTAAATGGACTTTTGCCTCAAGAAATTGGGAACTTGGAAAATATTGTCACAGTTGATCTCTCGGATAATGCCTTGTTCGGAAGCATTCCGGACTCAATCGGCAACTGTAAGAGCTTGGAGGAACTATTCATGGCCAATAATTTGTTCTCAGGCCAAATTCCTAATACTCTAGGAGAGATGAAAGGACTGGAGACTCTAGACCTCTCCTCAAACCAGCTCTTAGGTCCCATTCCTGATGATCTTCAGACACTTCAGGCCCTCCAATTCTTGAACCTCTCTTTCAATAACCTCGAAGGAGAAGTTCCGAATGATGGTGTCTTTAGAAATCTCACCAGAGTCAATCTTGAAGGAAACTCGAAGCTTTGCTTTCCTTCAGCTTGTAAGAGCAATCAAGATCGTGGAAAAATATCAATTGCAGCTCGAATTATAATTGCAACCGCAGGTTCAATAGCATTTTGTCTTCTGGTAGCTTTGTTATTATGTATTTCCTTCAACAGAAGAAAAAACTTGGCAAAGATGAAAGTGTCGTCGAACTTGTTTAAAGGGCAACATCAAATGGTTTCCTACGAAGATCTTCGAACAGCAACAGGGAATTTTGATCAGACAAATTTGATCGGAAGTGGGAGCTTCGGGTCCGTCTACAAAGGAATCCTCAGAGACGGAAGGGCCATTGCAGTGAAAGTTCTGGACCTCGGACAAACAGGAGCTTCAAAGAGCTTTTGGGCTGAATGTGAGGCTTTGAGGAATGTACGACATCGGAATCTGGTTAAACTGATTACCTCATGCTCAAGTGTCAATAACGCGAACACGGATTTTTTGGCTTTGGTTTATGAATTCATGGGAAATGGGAGCTTGGAGGATTGGTGTCGAGGAAGAAGAAGGCATGCAAGTGGAAATGGGTTGAATGTTATGGAGAGGTTGAACGTGGCCATTGATGTTGCTTGTGCCATGGACTACCTGCACAACGACTGCGAAGCTCCAGTGGTGCACTGTGACCTTAAGCCAAGCAACATCCTCTTGGACAAGGACATGACTGCAAAAATAGGAGACTTTGGGGTGGCAAGGCTGCTGGTTGAGAAAGCAGGTGATCAACAATCTTCTATTACCAATACATATGGCCTCAAGGGTTCTATAGGATACATACCTCCAGAATATGGGTTTGGTGGGAAACCATCAACAAGAGGAGATGTTTACAGCTACGGTGTCATGTTGCTAGAGCTCTTTACAGGGAGGAGCCCAACCCATGAGGCTTTTACAGGGGAAGTAAGCATAGCCAAGTGGGTGAAATCAGCCTTCCCCGACAACACTATCCAAGTCCTGGACCCTGACCTGCTACTACTAATGGATCATGTCAATCATGAAGGCGGACCGATAAGTCCCGAAATTCGACAGAAATGCTTGGTATCAATCATCGGGATTGGGCTATCTTGTGTTATTGAGTCTCCTGAAGCACGCATTAGCATGAAAAACGTCGTCCACGAATTGAAGAATGTAAGAGACACTCTCCACAAGTCAAGTCCATGTCAAGATAAATTATGA 3030 0.4383 MGFLVVFCIVVSAVLSPHSAAFDTLSDKAALLSFKTLITADPSNTLSTWNSNLSLCNWTGVMCDEIRQRVVGLDLKGLGLSGTISPYLANLSYLNSLQLQKNQFEGTIPDQIGDLSRLRVLNMSANLIQGTIPPNISRCSELIVLDLTGNEISGVIPIELGRLSKLQELKMNRNRLSGAIPPSIGNLSSLTSLKLATNLLSGSIPSEIGRLQNLQKLQLSINNLTGIVPLSLYNISSLVSIELASNQLWGEIPSDVGDTLPNLLEINFGVNDFTGPFPASLHNLTKIQSIRMEHNFLVGSVPPGLGNLPDLRVYDIGFNRIVSSGEAGLNFITSLTNSTHLEFLALDDNLLEGVIPESIGNLSTLLTKLYMGGNRRIYGNIPASIGRLRSLALLNLSHNSLSGEIPSEIGQLKELQLLGLAGNKIAGEIPASLGNLSKLNELELFGNELVGRIPTTFSNFQSLLSLDLSKNRLNGSIPKEVFGLSSLSILLNLSKNSLNGLLPQEIGNLENIVTVDLSDNALFGSIPDSIGNCKSLEELFMANNLFSGQIPNTLGEMKGLETLDLSSNQLLGPIPDDLQTLQALQFLNLSFNNLEGEVPNDGVFRNLTRVNLEGNSKLCFPSACKSNQDRGKISIAARIIIATAGSIAFCLLVALLLCISFNRRKNLAKMKVSSNLFKGQHQMVSYEDLRTATGNFDQTNLIGSGSFGSVYKGILRDGRAIAVKVLDLGQTGASKSFWAECEALRNVRHRNLVKLITSCSSVNNANTDFLALVYEFMGNGSLEDWCRGRRRHASGNGLNVMERLNVAIDVACAMDYLHNDCEAPVVHCDLKPSNILLDKDMTAKIGDFGVARLLVEKAGDQQSSITNTYGLKGSIGYIPPEYGFGGKPSTRGDVYSYGVMLLELFTGRSPTHEAFTGEVSIAKWVKSAFPDNTIQVLDPDLLLLMDHVNHEGGPISPEIRQKCLVSIIGIGLSCVIESPEARISMKNVVHELKNVRDTLHKSSPCQDKL* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00117 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Eupl03g00117 1009 SMART LRR_typ_2 388 412 IPR003591 -
Eupl03g00117 1009 SMART LRR_typ_2 211 234 IPR003591 -
Eupl03g00117 1009 SMART LRR_typ_2 115 139 IPR003591 -
Eupl03g00117 1009 SMART LRR_typ_2 163 187 IPR003591 -
Eupl03g00117 1009 SMART LRR_typ_2 509 533 IPR003591 -
Eupl03g00117 1009 SMART LRR_typ_2 557 580 IPR003591 -
Eupl03g00117 1009 SMART LRR_typ_2 581 606 IPR003591 -
Eupl03g00117 1009 SMART LRR_typ_2 460 484 IPR003591 -
Eupl03g00117 1009 SMART LRR_typ_2 436 459 IPR003591 -
Eupl03g00117 1009 SMART serkin_6 696 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g00117 1009 Pfam Protein kinase domain 698 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g00117 1009 Gene3D Ribonuclease Inhibitor 326 629 IPR032675 -
Eupl03g00117 1009 FunFam Leucine-rich repeat receptor protein kinase EMS1 182 260 - -
Eupl03g00117 1009 SUPERFAMILY L domain-like 24 321 - -
Eupl03g00117 1009 FunFam Leucine-rich repeat receptor-like protein kinase 24 181 - -
Eupl03g00117 1009 FunFam LRR receptor-like serine/threonine-protein kinase EFR 667 776 - -
Eupl03g00117 1009 Gene3D Ribonuclease Inhibitor 84 325 IPR032675 -
Eupl03g00117 1009 Gene3D Ribonuclease Inhibitor 22 83 IPR032675 -
Eupl03g00117 1009 Gene3D Phosphorylase Kinase; domain 1 658 776 - -
Eupl03g00117 1009 FunFam LRR receptor-like serine/threonine-protein kinase EFR 327 629 - -
Eupl03g00117 1009 SUPERFAMILY Protein kinase-like (PK-like) 677 992 IPR011009 -
Eupl03g00117 1009 PANTHER OS04G0122200 PROTEIN 209 996 - -
Eupl03g00117 1009 ProSiteProfiles Leucine-rich repeat profile. 213 234 IPR001611 GO:0005515
Eupl03g00117 1009 SUPERFAMILY L domain-like 365 621 - -
Eupl03g00117 1009 Gene3D Transferase(Phosphotransferase) domain 1 777 1007 - -
Eupl03g00117 1009 PRINTS Leucine-rich repeat signature 463 476 - -
Eupl03g00117 1009 PRINTS Leucine-rich repeat signature 557 570 - -
Eupl03g00117 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 777 1004 - -
Eupl03g00117 1009 ProSiteProfiles Protein kinase domain profile. 696 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g00117 1009 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Eupl03g00117 1009 ProSitePatterns Protein kinases ATP-binding region signature. 702 724 IPR017441 GO:0005524
Eupl03g00117 1009 Pfam Leucine Rich Repeat 560 581 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00117 Eupl-Chr3 3336139 3340295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00117 18 1003 Receptor kinase-like Gene Family AT3G47570 42.304 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Eupl03g00117 Pkinase 2.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00117 - - nnu:104612143 1235.71