Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00090 ATGGATCTAGGACAAGATGCAAATGACATAGAGAGTGTGGGATTGTTAATGGATGGGAAGCAGCTGGAGAGGAGCGGTTCGGATACATCAGAAAAAGAAATGATGATCAGAGAGCCACTCCTTAGGAAGAGGACAAACACCACCTCTCAGATTGCCATTGTTGGTTCCAATAGCTGCCCCATCGAGAGCCTTGATTATGAGATTGTTGAAAATGATCTATTCAAGCAGGATTGGCGGTCGAGGAAAAAGGTTCAGATATTTCAATATGTTGTCCTTAAGTGGACTCTTGCACTTCTTATAGGGTTAAGTACAGGGTTTGTTGGCTTTTTCAATAACCTTGCCGTCGAGAACATAGCTGGTTTCAAGTTGCTGCTCACTAGCGATCTCATGCTTAAGCAAAAGTACTACCAAGCATTTGCAACATATGCTGGTTGCAATGTCGTTTTGGCAGCTGCTGCTGCAGCCCTTTGTGCTTACATTGCCCCTGCAGCAGCAGGGTCTGGTATACCTGAAGTGAAAGCTTATCTCAATGGCATCGATGCTTATTCTATATTGGCTCCAAGTACTCTCTTTGTAAAGATATTTGGTTCCATCGGTGGAGTTTCTGCTGGATTTGTTCTGGGTAAGGAGGGCCCTATGGTACATACAGGAGCTTGCATAGCCAATTTACTTGGTCAGGGTGGTTCCCGTAAGTACCATTTGACGTGGACATGGCTCAGATATTTCAAAAATGATCGTGACCGGCGGGACTTGATCACTTGTGGTGCTGCTGCTGGTGTGGCGGCTGCCTTCCGTGCCCCAGTTGGTGGGGTCCTTTTTGCCCTTGAAGAAGCAGCATCATGGTGGCGGAGTGCTCTTCTTTGGAGAACATTTTTCACAACAGCCGTAGTTGCTGTGGTATTGAGAGCTTTCATAGAATACTGCAGGAGTGGAAAGTGTGGACTATTTGGGCAAGGAGGACTGATCATGTTTGACATGAGTTCAAGCACTGCCACATATAGAACCCCAGATCTAATAGCAGTAATAATCCTCGGAATCATTGGGGGCATTTTCGGAAGCCTCTACAACTATCTTGTGGACAAGGTCCTTCGCACTTACAGCAAAATCAATGAGAGAGGTGCTCCATTCAAAATCCTCCTTGTCATTTCCATCTCCCTCCTGACTTCGTGTTGCTCGTACGGCCTTCCATGGTTTGCAAAGTGCACCCCCTGCCCTACTGATCTGAAGGACGAGCAGTGCCCCACCATAGGTCGTTCTGGCAACTACAAGAACTTCCAATGCCAGCCAGGCCACTACAACGACCTTGCCTCCCTCTTCCTCAACACTAACGATGACGCCATCCGCAACCTCTTCAGTACTGGCACCGAGAATGAATTTTATTTATACACCTTGTTCATATTCTTTGCTGCTATCTACTTCCTTGGTATCATCACTTATGGCATTGCAGTCCCCTCTGGGCTCTTCATCCCAGTCATACTCGCTGGAGCTTCCTATGGCCGCCTTGTTGGTACCCTCCTCGGGTCCATCTCTGACCTTGACGCAGGTCTCTTTGCTCTCCTTGGAGCTGCGTCCTTCCTCGGTGGCACCATGAGGATGACGGTCTCCCTCTGTGTCATACTCCTCGAGCTCACGAATGATCTCCTTATGCTCCCCTTGGTGATGTTAGTTCTCCTTATTTCTAAAACTGTGGCAGATTGCTTCAACAAGGGCGTCTACGACCAGATAGTTAAAATGAAGGGGTTGCCTTACATGGAGGCCCATGCAGAGCCTTACATGAGGCACTTGGTTGCGAGGGACGTTGTGTCAGGTCCACTGGTCTGTTTCTCTGGTGTGGAGAAGGTGGGGAACATAATGCATGCCTTTATGATGACAAAGCATAATGGGTTCCCTGTAATAGATGAGCCACCTTTCTCGGATGCACCAGAATTGTGTGGGCTTGTGCTAAAGTCTCATTTGCTTGTGTTGCTTAATGGAAAGAGATTCACAAGGGAGAGGGTTGTGGCTGGGGAAGAGATTCTGCGTACGTTTGATGCATTCGATTTTGCCAAGGCAGGATCTGGTAAGGGGTTGAAACTGGAGGACCTGGATATTAAGGAGGAGGAGATGGAAATGTACATGGATCTCCATCCCATTACCAATAGATCCCCATACACAGTTGTGGAGACAATGTCACTAGCCAAAGCTGCACTCCTATTTCGGGAGCTTGGCCTCAGGCACTTGTGTGTAGTGCCAAAGACTCCAGGGAGACCTCCGGTCGTTGGAATTCTAACGCGGCATGATTTCATGCCAGAGCATATATTGGGACTCTACCCTCATTTCAATCCCCACAAGTAG 2334 0.4794 MDLGQDANDIESVGLLMDGKQLERSGSDTSEKEMMIREPLLRKRTNTTSQIAIVGSNSCPIESLDYEIVENDLFKQDWRSRKKVQIFQYVVLKWTLALLIGLSTGFVGFFNNLAVENIAGFKLLLTSDLMLKQKYYQAFATYAGCNVVLAAAAAALCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIGGVSAGFVLGKEGPMVHTGACIANLLGQGGSRKYHLTWTWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRAFIEYCRSGKCGLFGQGGLIMFDMSSSTATYRTPDLIAVIILGIIGGIFGSLYNYLVDKVLRTYSKINERGAPFKILLVISISLLTSCCSYGLPWFAKCTPCPTDLKDEQCPTIGRSGNYKNFQCQPGHYNDLASLFLNTNDDAIRNLFSTGTENEFYLYTLFIFFAAIYFLGIITYGIAVPSGLFIPVILAGASYGRLVGTLLGSISDLDAGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLVMLVLLISKTVADCFNKGVYDQIVKMKGLPYMEAHAEPYMRHLVARDVVSGPLVCFSGVEKVGNIMHAFMMTKHNGFPVIDEPPFSDAPELCGLVLKSHLLVLLNGKRFTRERVVAGEEILRTFDAFDFAKAGSGKGLKLEDLDIKEEEMEMYMDLHPITNRSPYTVVETMSLAKAALLFRELGLRHLCVVPKTPGRPPVVGILTRHDFMPEHILGLYPHFNPHK* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00090 777 ProSiteProfiles CBS domain profile. 712 775 IPR000644 -
Eupl03g00090 777 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 764 - -
Eupl03g00090 777 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Eupl03g00090 777 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Eupl03g00090 777 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Eupl03g00090 777 PRINTS Plant CLC chloride channel signature 435 451 IPR002251 GO:0005247|GO:0006821|GO:0016020
Eupl03g00090 777 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Eupl03g00090 777 Gene3D Clc chloride channel 85 584 - -
Eupl03g00090 777 Gene3D - 585 763 IPR046342 -
Eupl03g00090 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 767 - -
Eupl03g00090 777 SUPERFAMILY Clc chloride channel 71 586 IPR014743 -
Eupl03g00090 777 PRINTS Chloride channel signature 533 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl03g00090 777 PRINTS Chloride channel signature 571 585 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl03g00090 777 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl03g00090 777 PRINTS Chloride channel signature 483 503 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl03g00090 777 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl03g00090 777 PRINTS Chloride channel signature 515 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl03g00090 777 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl03g00090 777 Pfam Voltage gated chloride channel 150 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl03g00090 777 SUPERFAMILY CBS-domain pair 588 762 IPR046342 -
Eupl03g00090 777 Pfam CBS domain 713 761 IPR000644 -
Eupl03g00090 777 FunFam Chloride channel ClC3 85 402 - -
Eupl03g00090 777 CDD ClC_6_like 62 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00090 Eupl-Chr3 2582710 2588603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00090 6 777 Ion Channels AT5G49890 76.326 0.0 1193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00090 K05016 - psom:113347317 1229.54