Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00081 ATGACATCAAATCCAGCTTGCACGGTTTATGTAGGTAATTTGGATGAGAGGGTTAATGATAGAGTCCTGTATGAGATTCTTATTCAGGCGGGGAGGATAGTGAACTTGTACATCCCTCAAGACAAGGAAAACAATCGATACAAGGGTTATGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCAGACTTTTCTCTGGCCTTGTAATTCTCTACAATAGAACATTGAAATTTGCGATTTCTGGGAAAGATAAGCCCTCACAAAACTTGTCTACACTAATCTCTCCCACAGTGAACTTGTCTCCTAGACCGAGGTCTCACCCTATACTGTGTAACAATACGGAAACTTCCGAACGCTCCAGGTTTTCAGCAGGCCCTCCAAATTCTGTACAACAAGATCTTACTCCCCCTGGGGTAGTACAACCTAACAGGCATAGTTCAGATTTCAACAGCAACAATTACGGTTACAGTCAGCGGGTTTTGGGGGCAACAATTAATAGCATTTACCGCTCAAATTCAAGCCGTACGTTGTACGATTCCAGAAACCCAATCACTTACCCATCATATTGA 579 0.4266 MTSNPACTVYVGNLDERVNDRVLYEILIQAGRIVNLYIPQDKENNRYKGYAFAEYETEEIADYAVRLFSGLVILYNRTLKFAISGKDKPSQNLSTLISPTVNLSPRPRSHPILCNNTETSERSRFSAGPPNSVQQDLTPPGVVQPNRHSSDFNSNNYGYSQRVLGATINSIYRSNSSRTLYDSRNPITYPSY* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00081 192 Gene3D - 1 96 IPR012677 -
Eupl03g00081 192 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 188 - -
Eupl03g00081 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Eupl03g00081 192 SUPERFAMILY RNA-binding domain, RBD 4 88 IPR035979 GO:0003676
Eupl03g00081 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Eupl03g00081 192 MobiDBLite consensus disorder prediction 107 156 - -
Eupl03g00081 192 SMART rrm1_1 8 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00081 Eupl-Chr3 2395312 2399530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00081 9 73 Eukaryotic Initiation Factors Gene Family AT1G71770 32.308 5.39e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00081 K12831 - twl:120010595 229.18