LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl03g00073	ATGGCTGATCACTCTGTTATCACTATACCTTCTGCAACGCAACTGAGACGGCGTAAACTTCTTGAAGACGTCAACGATAACAGCTCCATGGTCTCCTGCTTTACAGCTGATATAAACCGAGAAAGGTTGGCCAGAATGGTGAAGGAGCAAAACTTGGAATCTTTTAGTGAATTTGGAGGAATCCAAAGAATCGCAAAAGCTCTTGGTACGGACACAGAGAAAGGTATCAGCGCAGATCCTGGAGATCTCCGTCGCCGACGTGTCCTATTTGGTTCAAACACCTACTTTAGGCAGGGCCGGCGGCAGCCATTAAAGGGCTTCTTTAGTTTCTTTGTCATTTCAGATTTTGTTATGGCATCATGTTTGGTGGTGAACGTGCTTTCTTATCTTGTTATTTTTACCGTGATGGAAATAAAGGAAACAATTCTCGTGTTCTTAGCAGCAGCTTTAATTGTACTACTATTGTGGAAATTTTACAGATGGAAAACCAAGAATTTCTGTAGGGCCAAAGAGTTAGAGAAGCTGTTGAATGAGAGCGATGAAATCCAAGTCAATGTTGTGAGAGACGGACGTCACCAACAGATTCGAATTCTGGACGTTGTCGTCGGTGACGTGGTAGTGTTAAACGAAGGCGATCAGATTCCGGCAGACGGATTGTTGCTACAAGGCTGTTCATGTCCATTGGAGAGTATTTCAAGTGTCGGCGAGCTAAATCACCCATTCATGTTTTTTGACTGCAAAGACTACCATGGACTTTGCCACATGCTTGTCACATCTGTTGGCGTAGAATCAAAGTGGGGTGAGAGGATGAACTCTTTCAGCCGTGAATTTCACAACCTCACACCGTCCATTTATGTTCTCGATCGAATCTTATTTCTGCTAAAGAGACTAACGGGCATACTGAAGGGCTTCTTTCGAAAAAAACAAAATAATTGCGATAATCGGCTATTCTTCGGAATCAACCAGGAAAGCCTCACTAAACTCTTAAAGGAGAAGAACCTTGATTCTCTATATCAATTGGGAGGAGTCGAAGGGATCACTGAGGCTTTGAAATCTGATGTGGATAGAGGAATCAATGGAGATGCAGGAGATCTCCACAGCCGAATCAGCACGTTTGGCTCGAACACCGACTTGAAGTTTAGGCAACCGCACGACAGCTTCAAAAGGTACCTATTAAAAGCCTTACTTGATAGCAACTTTTTGAATTTCTTATCCACTATAGTGGTCTACTTGACGTTGAGGATCAAGAAAGATGGCTGGAGAACCAAGGGGTGGTTTGCGGCACTATGCTTTTCAACTTTTGCTATATTCATTGACTTTGCCATTGCCAAAGCAACAAGAAGGATGCAATCGTCCTACAAATTGGAGAAGCTAAGCAACATCCAAGTCAGTGTTGTGAGAGACGGCCAAAAGAAACGAATTTCCAACCTTGATATTGTGGTCGGTGACGTAATATATTTAAGGGCGGGCGATTTCATTCCAGCTGATGGCTTGTTCCTTAAAGGAGATCACCTTTTGCAGGTTGAAAATGAATGTAGTATGAATGCGGTTGACACACAAATGCCATTCTTGTTCACTGGCTCGAAGGTCACTTGTGGTAGTGCGGCTAGTGCCTACATGCTTGTCACGTCTGTGGGCAAAAATACATCATGGGCCGAGATGATCATGAGCTCTCTGAACTTTTATTCCGAAAAATACAAGCCGCTTCAAACTCAGATTGAAAAGTTAATGTCATATAGAGAAAAGATTGCTTTGGTCAACTTGCTTATTCCTGCAGTGCTGCTGGGGCGTTGCCTCATTGGAAAACAACTCGACGATGACAATGGAAACTTTGTTACGCTACTAGTTGCAGTTTTCATTTTTGTAGTAAAAACTGTTGCGTGGAACTTGGGAATATTGTATTATGAAACATTGTCTTCGTGGAACTGGGGAGTGAATGATGTTTTTTCAAACGGTTCAAAATTCTTGAATCATATGACGGCGGGCCGGGTTTCTACCATCATCACGGATGAAAAAAGCATGCTGATGGAGACCCAGATGAAGGTTGCTGAGTTTCATTTACATGAAGAAACCATGCTGATAAAAGGCTTCTCCGGAACCCCCGAAATCATTCTTGAAGCACTGCGTTGCGGAGTTGCTCTAAACACACAGCCCGAGTTTTCTGGTTGCCCAGTAGAGAAAGCATTACTTTCTTGGGGTGTGTTAGAGTTGGGAATTGATATGGAGGAAATGGAGAGAACTCAGTGTGTTCTCAGTGTATCTTTCAATTCAGAGAAGAAACTAAGTGGGTCGTTGATAAGGAAGAGAGGGGACTCAGAAAAGACTGCGTACATGCATTGGAAAGGAGATGCAGAGTTGGTACTACCCAACTGTCAAAATTACTACGATAATGACGGGACCATGAAACCCTTGGACCCAGATAAAAGGGTGAAAATAAAACAAGTAATTGAAGGTATGAGGGCTAATGGTCTCATATGTATGGGTCTGGCTCACAAGCAAATCATAGAAGAGGAAAAAGAAGGAACAGAAGAAGTAAAAGGCCAAGGAGGAGAAGAAGAGGGAACACAAGGAGAAATAGAGGAAGTAAAAGATGGTGGAAAGGAAGGAGAAATCGAAGAAATACAAGGAGAAGTAGTAATAAAAGAAGAATTCAAACTCGAAGAAGATGGGTTGACATTGTTGGGGATAATCGGTTTGTGTCTGCCAGAGGAGGTGAAAAGGGCTGTGGAATCCTGTCAAGATATTGGAGTTAAGATCAAAATGGTATCAGAAAATGAGATTTCCCAAGCAAAAGCCATAGCTATTGGATGTGGAATACTTGCGCCCAATCAGGACGAAGATGGAGTACTGGTGATGGAAGCTGAAGCACTCCGAAACTGCTCGAACGAAGAAGAGAGGCTGGAAATGGTAGATAGAATATTTGTGATGCCAAGGTCCACCCCCTCAGACAAGCTTGACATGGTTAAGTGGTTGAAAGAGAGTGGCGAAGTAGTCTTAGTCACTGGAACAAGCACAAGTGATGTCGATGTAGTAAAAGAAGCCGATTTGGGCTTTTCAATGGAAACTGGCAGCACCGAGGCAGTGAAAGAAAGCTCAGACTTCATAATTTTGAACAATAATTTCGCCGCCATTGCCAATACCTTGAGGCTGGGAAGGTGCTTTAATAATTTCGTTCTTAAGCTTTCTGTGATCTATCATTCAGGACAAATCGTTGCATTCGTTATGAATTTCATAGTTGCAGTTGAGTTAGGCGGAACCACACTACCAGAGTTTGACCTACTTATCTTTAACTTTGGTTTGCCTATGGTAGTCTTTGCTCTATTCGATGCGCCACTTACGGAAGAAGAGATGAAGAAGACGTCAGTTGGTCGAAGTGTATGGGAGGTAACCAGGATCATTTGGGGAACCGTCATGGCTCAAGTTCTATTCCGAGTTGTCAGTTTGTTGATTTTGTTTTATAAAGGAAAAGCCTTTTTTGGCGTAGATAAGGGTGTTAAGGACACCATGATTTACACAACTCTCTATCTCTCTCAGCTTTTCAACATATTCTATGAGACGGTGCCGGAGAAGATGAATGTGTTCGAGGGGAATCTTTCATTTCCGTGCTGGTTATCATTGGGGGTCCTTTCTTTTCCATCGTTGGAGGTTTCCCATTGGAGTCAGTGGATAGCGTGTACTGGAATAGCAGCGATGTCTTTGCTCGTTACTTGGGCTGTAAAGTTCATACCTTTTGACAAGCTATTAGACATGGTTCAGCATTATTACAGTCGCATTGTTTTCTGGAGAAAAAGTGAACACGGGCAAAATCCACCATCTCCTACCATCGAACCGCCAGTGATGGAGAGTACCTCTTTACCTGGCGGTCAGTAG	3870	0.4302	MADHSVITIPSATQLRRRKLLEDVNDNSSMVSCFTADINRERLARMVKEQNLESFSEFGGIQRIAKALGTDTEKGISADPGDLRRRRVLFGSNTYFRQGRRQPLKGFFSFFVISDFVMASCLVVNVLSYLVIFTVMEIKETILVFLAAALIVLLLWKFYRWKTKNFCRAKELEKLLNESDEIQVNVVRDGRHQQIRILDVVVGDVVVLNEGDQIPADGLLLQGCSCPLESISSVGELNHPFMFFDCKDYHGLCHMLVTSVGVESKWGERMNSFSREFHNLTPSIYVLDRILFLLKRLTGILKGFFRKKQNNCDNRLFFGINQESLTKLLKEKNLDSLYQLGGVEGITEALKSDVDRGINGDAGDLHSRISTFGSNTDLKFRQPHDSFKRYLLKALLDSNFLNFLSTIVVYLTLRIKKDGWRTKGWFAALCFSTFAIFIDFAIAKATRRMQSSYKLEKLSNIQVSVVRDGQKKRISNLDIVVGDVIYLRAGDFIPADGLFLKGDHLLQVENECSMNAVDTQMPFLFTGSKVTCGSAASAYMLVTSVGKNTSWAEMIMSSLNFYSEKYKPLQTQIEKLMSYREKIALVNLLIPAVLLGRCLIGKQLDDDNGNFVTLLVAVFIFVVKTVAWNLGILYYETLSSWNWGVNDVFSNGSKFLNHMTAGRVSTIITDEKSMLMETQMKVAEFHLHEETMLIKGFSGTPEIILEALRCGVALNTQPEFSGCPVEKALLSWGVLELGIDMEEMERTQCVLSVSFNSEKKLSGSLIRKRGDSEKTAYMHWKGDAELVLPNCQNYYDNDGTMKPLDPDKRVKIKQVIEGMRANGLICMGLAHKQIIEEEKEGTEEVKGQGGEEEGTQGEIEEVKDGGKEGEIEEIQGEVVIKEEFKLEEDGLTLLGIIGLCLPEEVKRAVESCQDIGVKIKMVSENEISQAKAIAIGCGILAPNQDEDGVLVMEAEALRNCSNEEERLEMVDRIFVMPRSTPSDKLDMVKWLKESGEVVLVTGTSTSDVDVVKEADLGFSMETGSTEAVKESSDFIILNNNFAAIANTLRLGRCFNNFVLKLSVIYHSGQIVAFVMNFIVAVELGGTTLPEFDLLIFNFGLPMVVFALFDAPLTEEEMKKTSVGRSVWEVTRIIWGTVMAQVLFRVVSLLILFYKGKAFFGVDKGVKDTMIYTTLYLSQLFNIFYETVPEKMNVFEGNLSFPCWLSLGVLSFPSLEVSHWSQWIACTGIAAMSLLVTWAVKFIPFDKLLDMVQHYYSRIVFWRKSEHGQNPPSPTIEPPVMESTSLPGGQ*	1290

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl03g00073	1289	PANTHER	CATION TRANSPORTING ATPASE	311	1243	-	-
	Eupl03g00073	1289	SUPERFAMILY	Calcium ATPase, transmembrane domain M	340	1244	IPR023298	-
	Eupl03g00073	1289	Gene3D	-	657	898	IPR023299	GO:0000166
	Eupl03g00073	1289	Pfam	E1-E2 ATPase	458	605	-	-
	Eupl03g00073	1289	Pfam	E1-E2 ATPase	182	223	-	-
	Eupl03g00073	1289	Pfam	Cation transport ATPase (P-type)	719	793	-	-
	Eupl03g00073	1289	SUPERFAMILY	Calcium ATPase, transduction domain A	183	270	IPR008250	-
	Eupl03g00073	1289	MobiDBLite	consensus disorder prediction	1266	1289	-	-
	Eupl03g00073	1289	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	679	840	IPR023299	GO:0000166
	Eupl03g00073	1289	PRINTS	P-type cation-transporting ATPase superfamily signature	915	925	-	-
	Eupl03g00073	1289	PRINTS	P-type cation-transporting ATPase superfamily signature	1025	1037	-	-
	Eupl03g00073	1289	PRINTS	P-type cation-transporting ATPase superfamily signature	1001	1020	-	-
	Eupl03g00073	1289	MobiDBLite	consensus disorder prediction	839	853	-	-
	Eupl03g00073	1289	SUPERFAMILY	HAD-like	891	1049	IPR036412	-
	Eupl03g00073	1289	Gene3D	-	899	1045	IPR023214	-
	Eupl03g00073	1289	Gene3D	-	435	557	-	-
	Eupl03g00073	1289	SUPERFAMILY	Calcium ATPase, transduction domain A	461	554	IPR008250	-
	Eupl03g00073	1289	MobiDBLite	consensus disorder prediction	839	867	-	-
	Eupl03g00073	1289	Gene3D	-	160	272	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl03g00073	Eupl-Chr3	2046710	2050612	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl03g00073	38	282	Primary Pumps ATPases	AT5G57110	35.294	4.40e-33	137

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl03g00073	K01537		-	msin:131232505	541.962