Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00066 ATGACTCCAGCTAATTTAGCAGGTCAGTTTGGAGATACAACTTACACTAAAGTGTTTGTTGGTGGGTTAGCTTGGGAAACTCAGAGGGAAACCATGAGAAAATACTTTGAACAGTTTGGAGAGATTTTGGAGGCTGTTGTTATCACAGACAAGAACACTGGTAGATCCAAAGGCTATGGATTTGTAACTTTCCGTGAACCTGAAGCCGCCATGAAAGCTTGTGTTGATGCTGCTCCAGTGATTGATGGAAGAAGGGCTAACTGCAATCTTGCTTCTTTGGGTGTTCAAAGAACTAGACCTTCAACACCAAAACATGGAGGGAGCAGGAACTTTAGGGGAATGAACTCTTTTCATACAGGGGTTCAAGGTGGGGTTGGAACAGCTTTTCCTTCTGCTGCAACCTTCCCTCATTATGCCATCCAACAAGGGATTCCTTATAATCTATATGGGTACTCTCCATACTCGCCAGATTACACTTACCCAGCGAGCTACTATAATGTGTATGGAGGAGGGGCAGCAGCAGCGCAATATCCCATGTATGGAGCAGGAGCAGCTGGTGGGATGGTCACAGGGGCCGCGGCCACGGCCACCGCCTTCTACCCATATCTCCAGTTCGGTCAGGGCAGCGGCGGGGCTGCCCCCTACACCACTGGACAGGGCTACAACGTCCAATACCCTCACCATCTTTTTCAGTACTCAGGCATGAATTCAACTGGGTTTCCACAGCACTACGGTGGACCAATGTCTCTTGCGCCGACTCCATCCACACAAGCAGGCGTGACCATGGCTCTCACAGCTCCAACTCTTCATGCTGCTCCAACACCTCATCACTACAAACTTATCCCAACCCACTTCACCCCATCTGCTGCATCTGAGCAACCTTCGGCTTAA 891 0.4949 MTPANLAGQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLASLGVQRTRPSTPKHGGSRNFRGMNSFHTGVQGGVGTAFPSAATFPHYAIQQGIPYNLYGYSPYSPDYTYPASYYNVYGGGAAAAQYPMYGAGAAGGMVTGAAATATAFYPYLQFGQGSGGAAPYTTGQGYNVQYPHHLFQYSGMNSTGFPQHYGGPMSLAPTPSTQAGVTMALTAPTLHAAPTPHHYKLIPTHFTPSAASEQPSA* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00066 296 Gene3D - 4 111 IPR012677 -
Eupl03g00066 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Eupl03g00066 296 SMART rrm1_1 17 89 IPR000504 GO:0003723
Eupl03g00066 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Eupl03g00066 296 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Eupl03g00066 296 SUPERFAMILY RNA-binding domain, RBD 12 118 IPR035979 GO:0003676
Eupl03g00066 296 CDD RRM_RBM24_RBM38_like 16 91 - -
Eupl03g00066 296 PANTHER BOULE-RELATED 4 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00066 Eupl-Chr3 1920748 1923774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00066 1 92 C2H2 Transcription Factor Family AT2G19380 39.130 2.50e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00066 - - nnu:104593951 449.899