Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00059 ATGTCTTCTCCTATCGCCGAAGCAGTTTTCGATTCCAAAACTTCCTTGAACGAGTCGGAATCGTTACCGATTCAAAAAACAAAGAAACGATCCCGCCAACACGAGTTCTCTTTCATAGGCGTGCGTCGACGTAGCTGGGGTCGTTACGTTTCTGAGATACGTTTACCAAGGAAGAAAACCAGAATCTGGCTCGGATCGTTCCTATCACCCGAGATGGCGGCTAGGGCTTACGACTCGGCAGCGTTCTACTTGAGAGGTAAATCAGCGACTCTCAACTTCCCGGAGTCCGCGGGTTCTCTACCCCAACCCCACTCATCGTCCCGGAGCGATATACAGATGGCAGCAGCAAAAGCCGCTCTCGACTCAACGACGAAGATTGATCGGTTCGAGACGGACCCGTCTCGTACAGAATTGGTTTCCGATTCGGGTGTGGAGGAGGTTTTCTGGGGCTTAGAAGATGTAAAAGAGGCTCCTCTGCGCAGTCCGTTGAGGTTAGAACCAGACGCCGGAGACTATTTTTTTTACGAAGACGACGATCGGTTTTCCTTTACGTCTTGCTCTGAGTTCTTGTCAGTCTGTGATTTCCTACCAAATTACTGA 600 0.5017 MSSPIAEAVFDSKTSLNESESLPIQKTKKRSRQHEFSFIGVRRRSWGRYVSEIRLPRKKTRIWLGSFLSPEMAARAYDSAAFYLRGKSATLNFPESAGSLPQPHSSSRSDIQMAAAKAALDSTTKIDRFETDPSRTELVSDSGVEEVFWGLEDVKEAPLRSPLRLEPDAGDYFFYEDDDRFSFTSCSEFLSVCDFLPNY* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00059 199 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Eupl03g00059 199 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Eupl03g00059 199 FunFam Ethylene-responsive transcription factor 2 37 95 - -
Eupl03g00059 199 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Eupl03g00059 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 130 - -
Eupl03g00059 199 MobiDBLite consensus disorder prediction 1 22 - -
Eupl03g00059 199 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Eupl03g00059 199 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Eupl03g00059 199 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Eupl03g00059 199 MobiDBLite consensus disorder prediction 1 30 - -
Eupl03g00059 199 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Eupl03g00059 199 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00059 Eupl-Chr3 1706584 1707418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00059 17 119 AP2-EREBP Transcription Factor Family AT5G25810 59.223 2.41e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl03g00059 AP2 7.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00059 K09286 - nnu:104593944 192.971