Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00056 ATGGTTGTGAACGGCAGACCGTTGAAGCGTATGAAGAGAAGGGTCACCGCCGATCTTTACGACTTCTTGACGTTTCCGGCCTCCGTAGATGACTTTACCGGCCACCTCGACGGTCCGTTCCGCTCGAACGTACACTCCTTCCTCTCGAAGCACGGGCGTCTCCCGCCTCCGTCCACGCTCTTTCCACACCTTCTGACGTGGCAGATCTTGTTCCGGATCGGAGAGTTATCCGACGGCCAGGATTCTTCGCCGGCGGTCGTCACTCTCGATGTCGTCGAAGAGGACGTTACGAGGTCCAGATCCGTCTATTGCGACCAGTGCCGAGTTGTTGGTTGGAGTGGGCACCCTGTATGTGGAAAGCGTTACCATTTCATAATTCGGGCAGGCAGCAGTTCCATTGATGGGTATCACAAGTCATGTACAAGCTGTGGAGATTTGCTGCATTTGTCAGACTTGAGGTGTAAGTCATGCAACTATGTGATGACCACAGATGATCTAGAAGACTGGGTGTATCGCCAGTTGGAAGACACCACGCATCTGTTGCACGGTGTAGTGCACTCAAATGGCTATGGCCACCTTCTTAGAGTAAATGGCCGAGAAGGTGGCTCAAAGTTTCTTTCTGGGTGTGATATTATGGACTTTTGGGATCGGCTGTGTAAAACACTCAAAGTCAGGAAGGTCAGTGTTATGGACGTATCAAAGAAGTATGGGTTGGAATACCGGCTGCTTCATGCCGTCACCAATGGCAATCCCTGGTATGGGGATTGGGGTTATGAGTTTGGGGCTGGGAGCTTTGCCCTCACCCTAGACGCATATAGCAAGGCAGTTGACACCTTATCCAAAATGCCCCTCACCCTTTTGTTCTCCCAAGCTCGAAGACCCCGCTCCCGCCTACAGGATATAATCTCCTTCTACCAGTCCCTGTCAGAGCGTGAGCTTGTAACGACAAGGGACCTCATCTGTTTTTTGATGGAGCTGATCCACAATGCCCACGAGCAGTCTTTGGTGGTGAAGAGCAGCAAGAAGCCCAGGTCTTGCTCGAGGGTTTTGTGTGTGTGGTCAAAGGATGATGTTGAGCGTGTGGAACAGTCCATGATCAAGGTGCTCCGAGCAGTTGGTGGGTCCCACTGGGTTTCATGGCGAACACTTAAGGGTGCCGTATGTAGAGTGGCTTCTCCAGAGCTTGTTGATTACTGCCTCAAGGAGCTTGGAGGGAAATTGGCAGCTGACGGCACAACCGTTCATGCCCAGTGCAACTTTGATACGGATGCTATCGAATACAGGCTTGTGCCTAGTGATTCAATATCACATGACTTAAGCAATGGCTCTTCCATGTCGAGCTTGAATTGTTTAACCGAAGAACATCTCCTGAGGGACCTTAAATTCTTGTATGACACCCTCCTCCATCCCCAAACCATGCTGAAACACAGATCCCAAGCATGGGAAGCTGCAGTGTGCTCCGCAGTGAAGCTCCTCGACTGTAAGCAGTTTGTGAAGACCTACAAAACTGACAAGATGGCTCTCTTAAACCCTTTTGCAATCCACCTCACATGCCAAGTTGAGCTGATAGACCAGCCCAAGGACTACACAGCCCCACCACCTGAACTCATTGTCTTACCCTTGGATGCTACAGTTGCTGATCTTAAGGGTGAAGCATCCAAAGCTTTCCAAGAAGTATATGTGCTGTTCAAGAGGTTTCAAGCTGAGGAGCTGCTCGATTACGGTGTGAACGACTCAACTCGTGTCAAATTCTTAGTTGGGTCAAGTGGTTCGGTTCGAATACGTGGGAGGTGTATTGGAAAACATGGGCTCCATCGATTCCGAATGGAGAGGGGAACTGAGATCTGGACGGTCAATTGCATTTGTGGGGCCAGGGACGACGATGGGGAGAGAATGTTGGCATGTGATAAATGTGGAGTTTGGCAGCATACAAGATGTGCTGGGATCCATGATTTTGATCCAGTCCCAGAAAAATATGTATGTGGGAGATGTGGTAGCTCCAGCCAGAATGGATCGGCCAGCCTTTCCAAAGCTGGTAAGCACTGCAAGGATGAGACCAAAGCTGGTAGGCACTGCAAGGATGAATCTGTTGCTGTTTCCGGTGTCTGCAGACTTGGAGTGGCTTGA 2127 0.5045 MVVNGRPLKRMKRRVTADLYDFLTFPASVDDFTGHLDGPFRSNVHSFLSKHGRLPPPSTLFPHLLTWQILFRIGELSDGQDSSPAVVTLDVVEEDVTRSRSVYCDQCRVVGWSGHPVCGKRYHFIIRAGSSSIDGYHKSCTSCGDLLHLSDLRCKSCNYVMTTDDLEDWVYRQLEDTTHLLHGVVHSNGYGHLLRVNGREGGSKFLSGCDIMDFWDRLCKTLKVRKVSVMDVSKKYGLEYRLLHAVTNGNPWYGDWGYEFGAGSFALTLDAYSKAVDTLSKMPLTLLFSQARRPRSRLQDIISFYQSLSERELVTTRDLICFLMELIHNAHEQSLVVKSSKKPRSCSRVLCVWSKDDVERVEQSMIKVLRAVGGSHWVSWRTLKGAVCRVASPELVDYCLKELGGKLAADGTTVHAQCNFDTDAIEYRLVPSDSISHDLSNGSSMSSLNCLTEEHLLRDLKFLYDTLLHPQTMLKHRSQAWEAAVCSAVKLLDCKQFVKTYKTDKMALLNPFAIHLTCQVELIDQPKDYTAPPPELIVLPLDATVADLKGEASKAFQEVYVLFKRFQAEELLDYGVNDSTRVKFLVGSSGSVRIRGRCIGKHGLHRFRMERGTEIWTVNCICGARDDDGERMLACDKCGVWQHTRCAGIHDFDPVPEKYVCGRCGSSSQNGSASLSKAGKHCKDETKAGRHCKDESVAVSGVCRLGVA* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00056 708 CDD PHD_MMD1_like 620 664 - -
Eupl03g00056 708 ProSiteProfiles Zinc finger PHD-type profile. 617 667 IPR019787 -
Eupl03g00056 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 679 - -
Eupl03g00056 708 ProSitePatterns Zinc finger PHD-type signature. 620 664 IPR019786 -
Eupl03g00056 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 672 IPR013083 -
Eupl03g00056 708 Pfam PHD-finger 620 665 IPR019787 -
Eupl03g00056 708 SUPERFAMILY FYVE/PHD zinc finger 609 664 IPR011011 -
Eupl03g00056 708 SMART PHD_3 619 665 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00056 Eupl-Chr3 1621375 1628020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00056 75 664 PHD Transcription Factor Family AT5G22260 29.870 3.08e-81 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl03g00056 PHD 2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00056 K26271 - nnu:104593940 1055.05