Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00040 ATGTCCCCGACTACTAGGGTTGCAGTGAACTCAGCCGCCAAGCAAGCGGAGATCCTGAGGCAAGACGGCAATGTTTACTTCAAGAAAGATCGCTTTGGAGCCGCCATCGATGCTTATACCGAGGCCATTACTCTCTGCCCAAATGTGGCAGTATATTGGACTAACCGTGCACTTTGCCATCGGAAGAGAAATGATTGGACTAAAGTGGAGGAGGATTGCAGGAGAGCTCTTCAGCTCGATAACAATTCTGTCAAGGCCCACTATATGCTGGGACTTGCATTACTAGAGAGGGAAGAATATGCTGAAGGAGTCAAGGAATTGGAGAAGGCCTTGGATCTTGGGAGAGGTGCAAACCCTAATAGCTACATGGTGGAGGAGATCTGGCAGGAGCTTGCTAAAGCAAAATACTTGGAGTGGGAGCATGATTCTAGCAAGCGATCGTGGAAGCTGCAAAGCTTGAAAGAATTGTGCGAGAGAGCTCTAGAGGAGCAATATCTACTTGATGCATCTCAAGCTGAAGGTGTCACAGACGAAGCTGTGATAGCCCATTCAGAACAGTTAGAATCTCTGGCGGAAGTGTTTAGGAAGGCTGCAGAAGCAGACATACCAACTGAGGTGCCAGACTACCTATGCTGTAAAATCACGCTTGATATCTTCCGTGATCCTGTCATCACTCCAAGTGGGGTTACATACGAGAGAGCGGTACTTATTGATCATCTTCAGAAGGTGGGCAAATTTGATCCAATCACACGTGAACCACTTGACCAGCACCATCTGGTTCCGAACCTGGCCATCAAGGAAGCAGTCCAAGCATTTGTAAATGAGCATGGTTGGGCTTACAAGATGGATTGA 852 0.4777 MSPTTRVAVNSAAKQAEILRQDGNVYFKKDRFGAAIDAYTEAITLCPNVAVYWTNRALCHRKRNDWTKVEEDCRRALQLDNNSVKAHYMLGLALLEREEYAEGVKELEKALDLGRGANPNSYMVEEIWQELAKAKYLEWEHDSSKRSWKLQSLKELCERALEEQYLLDASQAEGVTDEAVIAHSEQLESLAEVFRKAAEADIPTEVPDYLCCKITLDIFRDPVITPSGVTYERAVLIDHLQKVGKFDPITREPLDQHHLVPNLAIKEAVQAFVNEHGWAYKMD* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00040 283 SMART Ubox_2 209 272 IPR003613 GO:0004842|GO:0016567
Eupl03g00040 283 SMART tpr_5 16 49 IPR019734 GO:0005515
Eupl03g00040 283 SMART tpr_5 84 117 IPR019734 GO:0005515
Eupl03g00040 283 SMART tpr_5 50 83 IPR019734 GO:0005515
Eupl03g00040 283 Pfam Tetratricopeptide repeat 23 48 IPR019734 GO:0005515
Eupl03g00040 283 Pfam U-box domain 206 278 IPR003613 GO:0004842|GO:0016567
Eupl03g00040 283 SUPERFAMILY TPR-like 9 141 IPR011990 GO:0005515
Eupl03g00040 283 Gene3D Tetratricopeptide repeat domain 8 146 IPR011990 GO:0005515
Eupl03g00040 283 ProSiteProfiles TPR repeat profile. 84 117 IPR019734 GO:0005515
Eupl03g00040 283 SUPERFAMILY RING/U-box 200 280 - -
Eupl03g00040 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 281 IPR045200 GO:0000209|GO:0061630
Eupl03g00040 283 ProSiteProfiles TPR repeat profile. 16 49 IPR019734 GO:0005515
Eupl03g00040 283 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 110 - -
Eupl03g00040 283 CDD RING-Ubox_CHIP 206 276 IPR045202 -
Eupl03g00040 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 282 IPR013083 -
Eupl03g00040 283 ProSiteProfiles U-box domain profile. 205 279 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00040 Eupl-Chr3 1213303 1228824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00040 12 282 U-box Gene Family AT3G07370 69.742 7.16e-143 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00040 K09561 - nnu:104593875 476.092