Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00030 ATGGAAGGAGCTTCGGGGCTTCATAATCCTCGAACGGTCGAAGAGGTATACAGGGACTTTAAAGGCAGACGCGCTGGGATGGTCAAGGCTCTCACCACTGATGTCAACAAGTTTTATGAACAATGTGATCCCGAGAAGGAGAACTTGTGTCTGTATGGCCTTCCAAATGAAACTTGGGAAGTGAACCTGCCTGCTGAGGAGGTACCTCCTGAGCTTCCTGAGCCAGCATTGGGGATAAATTTTGCTAGGGACGGGATGCAAGAAAGGGATTGGCTATCACTGGTTGCAGTTCACAGCGATGCGTGGTTACTTGCTGTTGCCTTCTATTTTGGCGCACGTTTTGGGTTTGACAAGAATGATAGGAAGAGGCTCTTCCAGATGATGAATGAACTTCCAACCATATTTGAAGTTGTGACTGGGGCAGCCAAAAAGCAACCAAACAAACCGACACCCACGCCCAACAGCAGCAGCAAAAGCAAATCAAGCGGGAAGATGCAACCTCGGCAGTCTGAATCCCAGACAAAGGGGCCAAAAATGCCATCCCAAAAAGACGAGGATGAAAGTGAGGAAGAAGAGGAAGATGAACAGGGGGGCACACTTTGCGGTGCTTGTGGTGATAACTATGGTAATGATGAGTTCTGGATCTGCTGTGATATATGCGAGAGATGGTTTCATGGAAAGTGTGTAAAGATAACACCTGCCAGGGCTGAGCACATCAAGCAGTACAAGTGCCCTGCCTGTAGCAACAAGAGGGCAAGAGCCTAA 765 0.4863 MEGASGLHNPRTVEEVYRDFKGRRAGMVKALTTDVNKFYEQCDPEKENLCLYGLPNETWEVNLPAEEVPPELPEPALGINFARDGMQERDWLSLVAVHSDAWLLAVAFYFGARFGFDKNDRKRLFQMMNELPTIFEVVTGAAKKQPNKPTPTPNSSSKSKSSGKMQPRQSESQTKGPKMPSQKDEDESEEEEEDEQGGTLCGACGDNYGNDEFWICCDICERWFHGKCVKITPARAEHIKQYKCPACSNKRARA* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00030 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Eupl03g00030 254 PANTHER CPG BINDING PROTEIN 9 253 IPR045104 GO:0006355|GO:0042393
Eupl03g00030 254 SMART PHD_3 200 248 IPR001965 -
Eupl03g00030 254 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Eupl03g00030 254 MobiDBLite consensus disorder prediction 140 198 - -
Eupl03g00030 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Eupl03g00030 254 SUPERFAMILY FYVE/PHD zinc finger 189 251 IPR011011 -
Eupl03g00030 254 Pfam PHD-finger 201 250 IPR019787 -
Eupl03g00030 254 CDD PHD_AL_plant 200 250 IPR044104 -
Eupl03g00030 254 FunFam PHD finger alfin-like protein 193 249 - -
Eupl03g00030 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Eupl03g00030 254 MobiDBLite consensus disorder prediction 145 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00030 Eupl-Chr3 961602 969912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00030 1 254 Alfin-like Transcription Factor Family AT3G42790 70.472 1.69e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Eupl03g00030 Alfin 1.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00030 K26274 - nnu:104593892 430.639