Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00024 ATGAAGATACAGTGCGACGTGTGCGAGAGGGCAGAGGCAGCGGTGCTGTGTTGTGCGGACGAGGCGGCTCTGTGTTGGGGATGCGACGAGAAGGTGCACGCAGCTAACAAGCTCGCCGGGAAACACCAGCGCGTCCCTCTCCTCCTCAACCACAACCATACCCATCCTTCCTGCGATATCTGCCAGGAGAAGGCCGGGTATTTCTTCTGCTTAGAGGACCGGGCGCTGCTTTGCAGGCAATGCGATGTGTCCATCCACACAGCGAGCCCATACGTGTCGTCCCACCAACGGTTCCTTGTCACTGGTGCCAAAGTTGCTCTCCAATGCGCACCCAACAACAATGAGAACACCACCAACAGCAACAGCAATAGTAGCAATGGTGGCAATTACCCTTTAAATTCCAATTCTCCCGCATCGAACACTTCCTCGGCTGACCACGTAACCGATAAGAAGTGCAGAGTGCCGGCAACAACTGCTGTTGCTACTTCTGTCACCACCTCAGGTGACCCCTACTCGGCGGTCCGGCCCCATTGGCCGTTAGATGAGATCCTGACTAGCGCTGATTTTGATCATTGTTATGGATTTTCGGAGCTCGGGGTCGTCCAGGATTAG 612 0.5523 MKIQCDVCERAEAAVLCCADEAALCWGCDEKVHAANKLAGKHQRVPLLLNHNHTHPSCDICQEKAGYFFCLEDRALLCRQCDVSIHTASPYVSSHQRFLVTGAKVALQCAPNNNENTTNSNSNSSNGGNYPLNSNSPASNTSSADHVTDKKCRVPATTAVATSVTTSGDPYSAVRPHWPLDEILTSADFDHCYGFSELGVVQD* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00024 203 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Eupl03g00024 203 CDD Bbox1_BBX-like 5 47 - -
Eupl03g00024 203 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Eupl03g00024 203 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 186 - -
Eupl03g00024 203 Gene3D Classic Zinc Finger 1 94 - -
Eupl03g00024 203 ProSiteProfiles Zinc finger B-box type profile. 58 100 IPR000315 GO:0008270
Eupl03g00024 203 CDD Bbox1_BBX-like 58 100 - -
Eupl03g00024 203 MobiDBLite consensus disorder prediction 111 145 - -
Eupl03g00024 203 SMART bboxneu5 53 100 IPR000315 GO:0008270
Eupl03g00024 203 SMART bboxneu5 4 47 IPR000315 GO:0008270
Eupl03g00024 203 MobiDBLite consensus disorder prediction 111 149 - -
Eupl03g00024 203 FunFam B-box zinc finger protein 22 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00024 Eupl-Chr3 775714 779320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00024 1 197 C2C2-CO-like Transcription Factor Family AT1G78600 47.115 4.77e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Eupl03g00024 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00024 - - nnu:104593908 270.396