Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00020 ATGGATCTTTCCAGTCAAGAAGGGGAGATCCCAATCCCAATAACCAGCAATTATGTTGGGGGACATGGGCATGGGCACATGATCCATCATGACCCCCCTCCCCACAACCACATCATCCCTTCTTCAGCACCCCAGCTCTCTTCTAATGGCCCCATCACCCCAAACCTGGAGGACCACATGCCCTACAAGAAAGTGGTGAGGTACAGGGAGTGCCTAAAGAACCATGCAGCAGCCATGGGTGGGAATGCCACAGATGGATGTGGTGAGTTCATGCCAAGTGGAGAAGAAGGCACCCTTGAAGCCCTCAAATGCTCAGCCTGCAATTGCCACAGGAACTTCCACAGGAAAGACATAGAAGGAGAGTCCTCCTCCTATGATGGCTACCACTACCCACATCTCAACAAAATGGGGAGGAAGTTCATCATGGGTCACCACAAGATGTTGGGATCTGAGGCCTTGGTGTACCCTACAGGCACTCTCATCCCCTCCTCAAGGGCACCACCACCCCACCATATGATAACGTCCTACATGGGGTCCCTCCCTTCAGAGTCTGATGAACAGGAAGGTGGTGGTGGTGTTGTAGCAAGACCATCCCAACTGGTGAAGAAGAGGTTCAGAACCAAGTTCACCCAAGAACAAAAGGAGAAGATGTTGGGCTTTGCAGAGAAGGTTGGATGGAGGATACAGAAGCAAGAAGAATCAGTGGTGCAGCAGTTCTGCCAAGAGCTTGGGATCAAGAGGAGAGTCCTTAAGGTGTGGATGCACAACAACAAGCACAATTTAGCCAAGAAGAACTCTCCCTCCACTACTTGA 813 0.5117 MDLSSQEGEIPIPITSNYVGGHGHGHMIHHDPPPHNHIIPSSAPQLSSNGPITPNLEDHMPYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTLEALKCSACNCHRNFHRKDIEGESSSYDGYHYPHLNKMGRKFIMGHHKMLGSEALVYPTGTLIPSSRAPPPHHMITSYMGSLPSESDEQEGGGGVVARPSQLVKKRFRTKFTQEQKEKMLGFAEKVGWRIQKQEESVVQQFCQELGIKRRVLKVWMHNNKHNLAKKNSPSTT* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00020 270 FunFam Zinc-finger homeodomain protein 2 193 263 - -
Eupl03g00020 270 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 261 - -
Eupl03g00020 270 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 117 IPR006456 -
Eupl03g00020 270 NCBIfam homeobox domain, ZF-HD class 202 258 IPR006455 -
Eupl03g00020 270 SUPERFAMILY Homeodomain-like 199 263 IPR009057 -
Eupl03g00020 270 Gene3D - 192 264 - -
Eupl03g00020 270 Pfam ZF-HD protein dimerisation region 66 118 IPR006456 -
Eupl03g00020 270 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 117 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00020 Eupl-Chr3 616003 617661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00020 1 264 ZF-HD Transcription Factor Family AT2G02540 45.395 9.77e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl03g00020 ZF-HD_dimer 1.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00020 - - nnu:104593910 444.506