Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00011 ATGGGGGAGAAGTTTTGGTTCAACGAAGAAGACAAGGCCATGGCCGAAGCTGTTCTGGGTGTTGAAGCTTGCGACTTTTTGATCTCATCGGCCTCCTCGAGCAGTGTTTCGACGGAGATAGTTATGCCGGGTGTGCAGCAGGAGCTCTGTCAGCTCGTCGAACGCTCTGGCTGGACTTACGCCATTTTCTGGCAGGTCTCGAGATCCAAATCTGGTGAGCCGACCTTGATTTGGGGCGACGGTAATTGCAGACGAGAAGAGAAAGAAAAACAAGAAGAAGAGGGATCTTCTCAGTACATGAGGAAGCGCGTGCTTCAGAAACTTCACGCCTTCTTCGGAGGCTCAGAGGAAGATAACTACACTGCACGCTTGGATTCTGTCTCCGACGTTGAAATGTTCTTTCTCACATCCATGTATTTCTCCTTCCCATACGATGCCCCGGCTGTTCCTGCTCGGGCATTTGCTTCGAATCGATCCATCTGGGTTGCGGACCCGAAAATTTGTTTAGATCATTATTGCTCGAGATCTTTTCTAGCAAGATCCGCCGGTTTCCGGACCTTGGTTTGTGTCCCGATCGAGTCGGGTGTGGTGGAGCTTGGTTCTGTCAAATCATTCCCTGAAGATCAGAATGTGTTGCAAATGATCAAAACTGTATTCGGAGGCCGTTCAGTTCCGGCGACGACAACTTCCATGCCTAGGATCTTCGGTCATGACCTCAGTCTTGGTAACACAAAACCTCGTTCCGTCACTATAAATTTCTCTCCAAAGGTGGAAGAAGAAACAATTTTCCCTTCAGAACCTTACAAAATGCAAGCAGTAGTCCCATCTGGAATTGGTAGCAATCGAGCGTTTGGTCCTTTTTCTAATGGGAGTGGAAGAGAAGAGCATAATGAAGTGAAGCTGTTTCCGCAGCCGAACCAGATGTTTGTAGGGGGTTTAAATCCTCAATCTAGGGTTTCCAGTTTAGAACAGCCCAAGGATGACCCGTTGCCTAGGCCAGATGAGCGTAGACCTAGGAAGAGGGGGAGAAAACCTGCCAATGGGAGAGAGGAACCGTTGAACCATGTGGAAGCAGAGCGGCAGAGACGGGAGAAACTTAACCAGCGGTTTTATGCATTAAGAGCTGTTGTCCCAAACATCTCAAAGATGGACAAGGCGTCGTTACTTGGAGATGCCATTACCTACATCACAGATCTCCAGATGAAGATCAGGGTCTTGGAAGCTGAAAAGGAGATTGTGAACAGTAATCAAAAGCAATTATCCATCCCGGAGATAGATGTTCAGACAAGGGAGGAGGACACAGTTATCCAGGTTAGCTGTCCACTGGATGCTCACCCGGTATCTGGAGTCATAAGGGCATTTAGGGAGACACAAGTTACTGCTCAAGATTCTAAATTTTCCACTACGGACAATGAGTCAGTTCTTCACACGTTCTCAATCCGGACTCAAGGTGGTGGAGGTGAGAATTTGAAGGAGAGGCTTGTTGCGGCCCTTTCAAGATGA 1503 0.4824 MGEKFWFNEEDKAMAEAVLGVEACDFLISSASSSSVSTEIVMPGVQQELCQLVERSGWTYAIFWQVSRSKSGEPTLIWGDGNCRREEKEKQEEEGSSQYMRKRVLQKLHAFFGGSEEDNYTARLDSVSDVEMFFLTSMYFSFPYDAPAVPARAFASNRSIWVADPKICLDHYCSRSFLARSAGFRTLVCVPIESGVVELGSVKSFPEDQNVLQMIKTVFGGRSVPATTTSMPRIFGHDLSLGNTKPRSVTINFSPKVEEETIFPSEPYKMQAVVPSGIGSNRAFGPFSNGSGREEHNEVKLFPQPNQMFVGGLNPQSRVSSLEQPKDDPLPRPDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLEAEKEIVNSNQKQLSIPEIDVQTREEDTVIQVSCPLDAHPVSGVIRAFRETQVTAQDSKFSTTDNESVLHTFSIRTQGGGGENLKERLVAALSR* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00011 500 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 420 IPR036638 GO:0046983
Eupl03g00011 500 MobiDBLite consensus disorder prediction 306 361 - -
Eupl03g00011 500 FunFam Transcription factor bHLH13 343 417 - -
Eupl03g00011 500 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 46 219 IPR025610 -
Eupl03g00011 500 Pfam Helix-loop-helix DNA-binding domain 354 400 IPR011598 GO:0046983
Eupl03g00011 500 MobiDBLite consensus disorder prediction 309 323 - -
Eupl03g00011 500 MobiDBLite consensus disorder prediction 325 361 - -
Eupl03g00011 500 SMART finulus 356 405 IPR011598 GO:0046983
Eupl03g00011 500 CDD bHLH_AtAIB_like 347 421 - -
Eupl03g00011 500 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Eupl03g00011 500 PANTHER MYC 35 497 IPR045084 GO:0003700|GO:0006355
Eupl03g00011 500 Gene3D - 343 416 IPR036638 GO:0046983
Eupl03g00011 500 Coils Coil 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00011 Eupl-Chr3 385153 397910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00011 1 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 49.116 2.25e-165 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl03g00011 bHLH-MYC_N 6e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00011 - - nnu:104593936 670.233