Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01431 ATGGCGTCGTCTACAATGGTGGAAGATAACAGTATCGAAGATGACCAGCTCGAATCCATGTCTTCAGACGACATTGTTAGAGCTTCTCGCCTTCTTGACAACGAAATCCGAATACTCAAAGAAGAGTTGCAGAGAACAAATCTGGAGTTGGATTCGTTCAAGGAAAAGATCAAAGAGAATCAGGAGAAGATCAAGCTTAACAAACAGCTCCCTTACTTAGTCGGTAACATTGTTGAGATTTTGGAGATGAACCCAGAGGATGAGGCTGAGGAAGATGGTGCCAATGTTGATCTAGATTCGCAAAGGAAGGGGAAGTGTGTTGTGCTAAAAACATCTACCCGCCAGACAATCTTTTTGCCTGTCGTGGGACTTGTTGATCCTGATAAGCTTAAACCCGGCGATTTGGTTGGCGTTAACAAAGACAGCTATCTGATATTAGATACTCTTCCTTCTGAGTATGATTCACGTGTAAAGGCTATGGAGGTTGATGAAAAACCAACCGAAGACTATAATGATATTGGTGGCCTTGAAAAGCAGATTCAAGAACTTGTTGAGGCCATTGTTTTGCCCATGACCCACCAAGAAAGGTTTCAGAAATTAGGAATTCGTCCACCCAAAGGAGTGCTTTTGTATGGACCACCTGGTACGGGCAAAACTTTAATGGCTCGTGCATGTGCAGCTCAGACAAATGCTACTTTTTTGAAGCTAGCAGGTCCACAGTTGGTTCAGATGTTTATTGGTGACGGAGCAAAACTCGTTCGTGATGCTTTTCAACTTGCAAAGGAGAAATCCCCCTGCATCATTTTTATAGACGAAATTGATGCGATTGGAACAAAGCGATTTGATAGTGAAGTAAGTGGAGATAGGGAAGTACAGCGGACAATGTTGGAGCTACTTAATCAACTTGATGGTTTTAGCAGTGACGATCGGATAAAGGTCATAGCAGCAACAAATCGTGCTGATATTCTGGATCCTGCTCTCATGCGTTCAGGTCGCTTGGATCGAAAAATTGAGTTCCCTCATCCGACTGAAGATGCAAGGGCCAGAATATTGCAGATCCATTCAAGAAAAATGACCGTGAATCCAGATGTGAACTTCGAAGAGCTGGCTCGTTCAACGGATGACTTCAATGGGGCACAATTGAAAGCTGTTTGTGTAGAGGCTGGCATGTTGGCTCTCCGACGAGATGCAACTGAGGTTCTAATTTACGCCACCTTATTTCTGCTCTTGTCAATTGATTCCTACCATGGAATGGCACTGCGTTGTATTCTCTTCACTAACCGACGACAAATTGGTTTTCATTTTTTTGTTGCCGCTACCACCAAAGGAATTATATGTCAACACCTGAGCCGATGGACTTCAGCTCAGACTCCTAACTTTGCCAAAACCTGCCCACTTGGCTCAAACTTTAACCCTGCAACCACTGTCGCTATCATCTAA 1440 0.4375 MASSTMVEDNSIEDDQLESMSSDDIVRASRLLDNEIRILKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANVDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHQERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEDARARILQIHSRKMTVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVLIYATLFLLLSIDSYHGMALRCILFTNRRQIGFHFFVAATTKGIICQHLSRWTSAQTPNFAKTCPLGSNFNPATTVAII* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01431 479 Pfam ATPase family associated with various cellular activities (AAA) 208 340 IPR003959 GO:0005524|GO:0016887
Eupl02g01431 479 SMART AAA_5 204 343 IPR003593 GO:0016887
Eupl02g01431 479 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 15 401 - -
Eupl02g01431 479 Pfam Proteasomal ATPase OB C-terminal domain 74 150 IPR032501 -
Eupl02g01431 479 ProSitePatterns AAA-protein family signature. 311 329 IPR003960 GO:0005524|GO:0016887
Eupl02g01431 479 Gene3D - 160 341 IPR027417 -
Eupl02g01431 479 Gene3D - 343 406 - -
Eupl02g01431 479 Gene3D - 32 159 IPR012340 -
Eupl02g01431 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 399 IPR027417 -
Eupl02g01431 479 FunFam 26S protease regulatory subunit 6A 32 159 - -
Eupl02g01431 479 Pfam AAA+ lid domain 363 400 IPR041569 -
Eupl02g01431 479 FunFam 26S protease regulatory subunit 6A 343 402 - -
Eupl02g01431 479 Coils Coil 29 63 - -
Eupl02g01431 479 FunFam 26S protease regulatory subunit 6A 160 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01431 Eupl-Chr2 32321446 32336378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01431 149 395 Calmodulin-binding Proteins AT3G56690 38.492 1.93e-45 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01431 K03065 - ming:122077305 748.429