Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01408 ATGGATCAATCTGGACAACAGCAGCAGCAGCAAGAGCAGACAGTGGTGGGAGTTGTTACCAGTGCAGGTCAAGTAGCATATGCTGCCCCTCCCTACCAGACTGCTCCAATGGTGGCTTCTGGTGCTCCGGCGGTAGCTGTCCCTTCTCCGACTCAGCCTGCTGCAGCCTTCTCCGCTTCCCAACATCAACTAGCATACCAGCAAGCCCAGCACTTCCACCACCAACAGCAGCAGCAACAAGAACAACAACTTCAGGTTTTTTGGGCCAACCAGCTCCAGGAGATCGAGCAAACGACTGACTTCAAGAACCACAGCCTCCCGCTTGCTCGGATCAAGAAGATAATGAAAGCAGACGAGGATGTCCGGATGATTTCAGCTGAGGCTCCAGTCGTATTCGCAAAGGCCTGCGAGATGTTCATCTTGGAGTTGACACTGCGCTCATGGCTACACACAGAGGAGAACAAGCGGAGGACACTGCAGAAGAATGACATTGCTGCAGCCATTACAAGGACCGACATATTCGACTTCTTGGTCGATATTGTCCCGAGGGACGAGTTGAAGGAGGAGGGCATGGGGATCCCAAGGGCTGCCTTACCAGCTGTGGGCACCCCAGCTGATTCTATTCCATATTACTATGTCCCTCCACAACATCAGGTGGGGCCCCCAGGGACAATCTATGCTGCCCAGCACCCTCGCCCCCCAGTAGCTTACATGCCATGGCCACAGCCGCCTCAGCAACAGCAGCCTCAACAGCAACAAACAGACAACTGA 771 0.5435 MDQSGQQQQQQEQTVVGVVTSAGQVAYAAPPYQTAPMVASGAPAVAVPSPTQPAAAFSASQHQLAYQQAQHFHHQQQQQQEQQLQVFWANQLQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWLHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDELKEEGMGIPRAALPAVGTPADSIPYYYVPPQHQVGPPGTIYAAQHPRPPVAYMPWPQPPQQQQPQQQQTDN* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01408 256 SUPERFAMILY Histone-fold 68 177 IPR009072 GO:0046982
Eupl02g01408 256 Gene3D Histone, subunit A 66 183 IPR009072 GO:0046982
Eupl02g01408 256 MobiDBLite consensus disorder prediction 226 256 - -
Eupl02g01408 256 FunFam Nuclear transcription factor Y subunit gamma 70 183 - -
Eupl02g01408 256 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 62 252 - -
Eupl02g01408 256 Pfam Core histone H2A/H2B/H3/H4 69 168 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01408 Eupl-Chr2 31799550 31810621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01408 84 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 80.916 2.76e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Eupl02g01408 CBFD_NFYB_HMF 1.2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01408 K08066 - nnu:104599653 365.54