Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01398 ATGGGTTTGCCTGTGGCTCACACATCATACACACCTCATTCCAAGACTCTTCACTCCATCAAAGGCAAGGAAGCAAGCAAGATCAGGAAAATTGAGCAAGAAAAAAGGGTAAATTTCCCTTCTTTTTCTCTTTCCTTAACAAGAAGAGAGACTAGTTTACACTGTTGGATAATTATGGGACGGGGAAAAATAGAGATCAAGAGGATTGAGAACACGACCAACAGGCAAGTCACCTTTTCGAAGCGCCGAGGAGGGCTGTTGAAGAAGGCCCATGAGCTTTCCGTGCTGTGTGATGCCCAACTTGGGCTCGTTGTCTTCTCTACTTCCGGCAAAATGTATGAGTACTGCAGCTCACCATTGAGTATGAGACAAATCATAGACCGGTACCAGAAAGCCTCGGGAATACCTGTTCAAGACTATGATAGAAATCAAGTATACACTGAGATGACGAAGTTGAGAAACGAAACTGAGAAGCTTCAGGCCAGCGTTCGACAATTAACTGGCGAAGACTTGAGCTCGTTACAGTATGATAACTTGCAAGAGCTTGAAGTAAAACTAGAAATGTCTATAAACAAGGTTCGAGCTAGGAAGAACCAGCTCTTGATTCAACAGTTGGAGAACTTACGTAGGAAGGAGCGAATCCTGGAGGAGGAAAACCACCACTTGCACCGTTCTCTTGGGGAGAATCAAGCAGCAATGGAACGTTTCGAAGCAGTAATGGAGCATCAAGCAGCAATGGAACGCCACCAAGCAGCATTAATGGAGCATCATCAACAAGCAGTGATTGAACATAAGGAAGTGGAACATCCAATGTTGCTGGATCATTTCGGACTGTATCCGGACGAGCAAGTCAGGAACATGCTTCAGCTCGCTCCTCAACTCCAACCAATATTTCGTCTCCAGCCTACTCAGCCTAACCTACAAGAAGCTCGTCTCCAACTCAACAGTTTGCAGCTCTGA 960 0.4542 MGLPVAHTSYTPHSKTLHSIKGKEASKIRKIEQEKRVNFPSFSLSLTRRETSLHCWIIMGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAQLGLVVFSTSGKMYEYCSSPLSMRQIIDRYQKASGIPVQDYDRNQVYTEMTKLRNETEKLQASVRQLTGEDLSSLQYDNLQELEVKLEMSINKVRARKNQLLIQQLENLRRKERILEEENHHLHRSLGENQAAMERFEAVMEHQAAMERHQAALMEHHQQAVIEHKEVEHPMLLDHFGLYPDEQVRNMLQLAPQLQPIFRLQPTQPNLQEARLQLNSLQL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01398 319 ProSitePatterns MADS-box domain signature. 61 115 IPR002100 GO:0003677|GO:0046983
Eupl02g01398 319 Coils Coil 149 169 - -
Eupl02g01398 319 Gene3D - 71 140 IPR036879 GO:0003677|GO:0046983
Eupl02g01398 319 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 68 115 IPR002100 GO:0003677|GO:0046983
Eupl02g01398 319 PRINTS MADS domain signature 81 96 IPR002100 GO:0003677|GO:0046983
Eupl02g01398 319 PRINTS MADS domain signature 61 81 IPR002100 GO:0003677|GO:0046983
Eupl02g01398 319 PRINTS MADS domain signature 96 117 IPR002100 GO:0003677|GO:0046983
Eupl02g01398 319 SUPERFAMILY SRF-like 60 149 IPR036879 GO:0003677|GO:0046983
Eupl02g01398 319 FunFam MADS-box transcription factor MADS-MC 71 145 - -
Eupl02g01398 319 ProSiteProfiles K-box domain profile. 142 232 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl02g01398 319 Pfam K-box region 141 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl02g01398 319 PANTHER SERUM RESPONSE FACTOR HOMOLOG 61 241 - -
Eupl02g01398 319 ProSiteProfiles MADS-box domain profile. 59 119 IPR002100 GO:0003677|GO:0046983
Eupl02g01398 319 Coils Coil 179 225 - -
Eupl02g01398 319 SMART madsneu2 59 118 IPR002100 GO:0003677|GO:0046983
Eupl02g01398 319 CDD MADS_MEF2_like 60 134 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01398 Eupl-Chr2 31588872 31601557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01398 59 308 MADS-box Gene Family AT5G23260 45.113 7.01e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl02g01398 K-box 6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01398 - - nnu:104598443 318.931