Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01386 ATGCAACTCTTCTACCTCTCCAAAACCCAAGATCCTACGACATCTTCCTCCGACGAACATTCCGGCGAACATTGGCATCCTCCGTCCGAAAAAGAGAATTTGGAGACCTCCGGCTACTTGTATATGATGGATGGAGATAGTGTAGAAGTTACGACATTCAAGGGTTTGGGCATATGCGATCAATTGGTGGAGGCTTGTGAAAATCTGGGATGGAAAAATCCCTCGAAGATCCAGGTTGAGGCCATGCCTCACGCTCTTGAAGGAAAAGATTTGATTGGGCTCGCACAAACCGGTTCTGGTAAAACCGGAGCTTTCGCTCTTCCCATTCTCCAAGCCCTCTTAGAGTCTCCACAGGCATTCTTTGCTTGCGTGCTCTCCCCAACACGGGAGCTTGCAATTCAGATTGCCGAACAGTTTGAAGCTTTGGGGTCTGGCATAGGTGTAAAGTGTGCAGTGGTTGTTGGAGGGGTAGACATGATGCAACAGACAATTGCTCTTGCAAAGAGGCCACATATTATTGTTGGCACACCTGGGCGCCTTCTGGATCATCTGTCAAATACAAAGGGTTTTAGCCTTCGTACGTTGAAATACTTGGTATTGGATGAGGCAGATAGGTTGCTAAATGATGACTTTGAGAAAGCAATTGATGACATCTTGAAGGCTATTCCACGGGAGCGTAAGACATATCTATTTTCAGCTACCATGACCAAAAAGGTGCGCAAGCTCCAGAGGGCATGTCTGAGGAATCCTGTGAAGATTGAGGCAGCGTCTAAATATTCCACTGTTGATACACTCAAGCAGCAGTATTGCTTCGTTCCTGCGAAGTACAAGGACTGCTACCTGGTATACATTCTGAGCGAGATGTCCGGAAGTACTTCTATGGTTTTCACTCGTACATGTGAGGCAACTCGGAATCTGGCCTTGCTTCTTCGAAACCTTGGATTAATGGCCATCCCGATTAGTGGACAAATGAGCCAGGCGAAGAGACTTGGAGCCTTAAACAAGTTCAAGGCTGGAGAGTGTAACATTCTGATCTGCACAGATGTGGCGAGTAGAGGTCTTGATATTCCTTCTGTAGATATGGTCATCAATTATGACATCCCTTCCAATTCTAAGGATTATATTCATCGAGTGGGTAGAACTGCTCGTGCAGGACGCTCTGGGGTTGCGATCTCTTTAGTAAATCAATACGAGTTGGAGTGGTTTATTCAGATAGAGAAGCTTATCGGCAAAAAGCTTCCTGAATTTGTTGCTCAAGAAGAGGAAGTTCTGCTACTTTTGGAGCGTGTCACAGAGTCCCAAAGAATTTCTCGCACGAAAATGAAAGAGAGTGGGGGCAGAAGGAAAAGAAGAGGGGAAGGAGATGATGGTGAGGAAGAAGTTGACAGGTATTTAAGTCACAAGAATGGAAAGTCAGCCAAAAAGTCAAAGAAGCGATGA 1440 0.4583 MQLFYLSKTQDPTTSSSDEHSGEHWHPPSEKENLETSGYLYMMDGDSVEVTTFKGLGICDQLVEACENLGWKNPSKIQVEAMPHALEGKDLIGLAQTGSGKTGAFALPILQALLESPQAFFACVLSPTRELAIQIAEQFEALGSGIGVKCAVVVGGVDMMQQTIALAKRPHIIVGTPGRLLDHLSNTKGFSLRTLKYLVLDEADRLLNDDFEKAIDDILKAIPRERKTYLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYCFVPAKYKDCYLVYILSEMSGSTSMVFTRTCEATRNLALLLRNLGLMAIPISGQMSQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWFIQIEKLIGKKLPEFVAQEEEVLLLLERVTESQRISRTKMKESGGRRKRRGEGDDGEEEVDRYLSHKNGKSAKKSKKR* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01386 479 Gene3D - 259 430 IPR027417 -
Eupl02g01386 479 SMART ultradead3 70 268 IPR014001 -
Eupl02g01386 479 MobiDBLite consensus disorder prediction 17 31 - -
Eupl02g01386 479 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 280 424 IPR001650 -
Eupl02g01386 479 SMART helicmild6 304 385 IPR001650 -
Eupl02g01386 479 CDD DEADc_DDX47 52 254 IPR044765 GO:0005524
Eupl02g01386 479 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 48 443 - -
Eupl02g01386 479 MobiDBLite consensus disorder prediction 1 32 - -
Eupl02g01386 479 CDD SF2_C_DEAD 265 394 - -
Eupl02g01386 479 Pfam Helicase conserved C-terminal domain 279 385 IPR001650 -
Eupl02g01386 479 Pfam DEAD/DEAH box helicase 76 242 IPR011545 GO:0003676|GO:0005524
Eupl02g01386 479 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 199 207 IPR000629 -
Eupl02g01386 479 MobiDBLite consensus disorder prediction 436 469 - -
Eupl02g01386 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 406 IPR027417 -
Eupl02g01386 479 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 253 IPR014001 -
Eupl02g01386 479 MobiDBLite consensus disorder prediction 436 479 - -
Eupl02g01386 479 Gene3D - 43 256 IPR027417 -
Eupl02g01386 479 MobiDBLite consensus disorder prediction 1 16 - -
Eupl02g01386 479 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 51 79 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01386 Eupl-Chr2 31402362 31423000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01386 46 416 Eukaryotic Initiation Factors Gene Family AT3G19760 31.635 9.73e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01386 K14777 - vvi:100246466 716.072