Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01375 ATGATGGATGGAGATAGTGTAGAAGTTACGACATTCAAGGGTTTGGGCATATGCGATCAATTGGTGGAGGCCTGTGAAAATCTGGGATGGAAAAATCCCTCGAAGATCCAGGTTGAGGCCATGCCTCACGCTCTTGAAGGAAAAGATTTGATTGGGCTCGCACAAACCGGTTCTGGTAAAACCGGAGCTTTCGCTCTTCCCATTCTCCAAGCCCTCTTAGAGTCTCCACAGGCATTCTTTGCTTGCGTGCTCTCCCCAACACGGGAGCTTGCAATTCAGATTGCCGAACAGTTTGAAGCTTTGGGGTCTGGCATAGGTGTAAAGTGTGCAGTGGTTGTTGGAGGGGTAGACATGATGCAACAGACAATTGCTCTTGCAAAGAGGCCACATATTATTGTTGGCACACCTGGGCGCCTTCTGGATCATTTGTCAAATACAAAGGGTTTTAGCCTTCGTACGTTGAAATACTTGGTATTGGATGAGGCAGATAGGTTGCTAAATGATGACTTTGAGAAAGCAATTGATGACATCTTGAAGGCTATTCCACGGGAGCGTAAGACATATCTATTTTCAGCTACCATGACCAAAAAGGTGCGCAAGCTCCAGAGGGCATGTCTGAGGAATCCTGTGAAGATTGAGGCAGCGTCTAAATATTCCACTGTTGATACACTCAAGCAGCAGTATTGCTTCGTTCCTGCGAAGTACAAGGACTGCTACCTGGTATACATTCTGAGCGAGATGTCCGGAAGTACTTCTATGGTTTTCACTCGTACATGTGAGGCAACTCGGAATCTGGCCTTGCTTCTTCGAAACCTTGGATTAAGGGCCATCCCGATTAGTGGACAAATGAGCCAGGCGAAGAGACTTGGAGCCTTAAACAAGTTCAAGGCTGGAGAGTGTAACATTCTGATCTGCACAGATGTGGCGAGTAGAGGTCTTGATATTCCTTCTGTAGATATGGTCATCAATTATGACATCCCTTCCAATTCTAAGGATTATATTCATCGAGTGGGTAGAACTGCTCGTGCAGGTCGCTCTGGGGTTGCGATCTCTTTAGTAAATCAATACGAGTTGGAGTGGTTTATTCAGATAGAGAAGCTTATCGGCAAAAAGCTTCCTGAATTTGTTGCTCAAGAAGAGGAAGTTCTGCTACTTTTGGAGCGTGTCACAGAGTCCCAAAGAATTTCTCGCACGTAA 1197 0.4586 MMDGDSVEVTTFKGLGICDQLVEACENLGWKNPSKIQVEAMPHALEGKDLIGLAQTGSGKTGAFALPILQALLESPQAFFACVLSPTRELAIQIAEQFEALGSGIGVKCAVVVGGVDMMQQTIALAKRPHIIVGTPGRLLDHLSNTKGFSLRTLKYLVLDEADRLLNDDFEKAIDDILKAIPRERKTYLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYCFVPAKYKDCYLVYILSEMSGSTSMVFTRTCEATRNLALLLRNLGLRAIPISGQMSQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWFIQIEKLIGKKLPEFVAQEEEVLLLLERVTESQRISRT* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01375 398 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 383 IPR001650 -
Eupl02g01375 398 Pfam DEAD/DEAH box helicase 35 201 IPR011545 GO:0003676|GO:0005524
Eupl02g01375 398 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Eupl02g01375 398 Pfam Helicase conserved C-terminal domain 238 344 IPR001650 -
Eupl02g01375 398 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 212 IPR014001 -
Eupl02g01375 398 CDD SF2_C_DEAD 224 353 - -
Eupl02g01375 398 SMART ultradead3 29 227 IPR014001 -
Eupl02g01375 398 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 8 383 - -
Eupl02g01375 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 365 IPR027417 -
Eupl02g01375 398 Gene3D - 3 215 IPR027417 -
Eupl02g01375 398 CDD DEADc_DDX47 11 213 IPR044765 GO:0005524
Eupl02g01375 398 Gene3D - 218 388 IPR027417 -
Eupl02g01375 398 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 158 166 IPR000629 -
Eupl02g01375 398 SMART helicmild6 263 344 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01375 Eupl-Chr2 31147644 31172676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01375 5 375 Eukaryotic Initiation Factors Gene Family AT3G19760 31.635 4.33e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01375 K14777 - psom:113289799 701.434