Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01271 ATGGCTCGACGAAACGGCCCCGGCCCCGTACCTGGCGTTGACGACGATAACTTGGTGTTCGAGACGAGCCCCGGCGTGGAAGCTATCACGAGCTTCGATGAGATGGGGATCCGAGACGACCTCCTCCGCGGGATCTATGCTTACGGCTTCGAAAAGCCCTCGGCGATACAGCAGAGGGCAGTGTTGCCAATCATCAAGGGTCGAGATGTCATCGCGCAGGCCCAGTCTGGGACGGGGAAGACCTCCATGATCGCCCTCACTGTTTGTCAGATGGTCGATACCTCCAGCAGAGAGGTCCAAGCACTGATCTTGTCACCTACTAGAGAGCTTGCTACACAGACTGAGAAAGTAATTTTAGCAGTTGGTGATTACATAAATATACAGGCCCATGCATGTATCGGAGGCAAAAGTGTAGGTGAGGATATAAGGAAACTAGAATATGGAGTCCATGTAGTGTCTGGAACACCGGGTAGAGTCTGTGACATGATCAAGAGAAGAACATTACGCACCAGAGCTATCAAATTGTTAGTCCTTGATGAATCTGATGAGATGTTGAGCAGAGGATTTAAAGATCAAATTTATGATGTTTATAGATATCTTCCACCAGAGCTTCAGGTTGTCTTGATCTCTGCAACTCTTCCTCATGAAATATTGGAAATAACAAGCAAGTTTATGACGGAGCCTGTTAGGATTCTTGTGAAACGTGATGAATTGACTTTGGAGGGAATTAAACAATTCTTTGTTGCTGTTGAAAGAGAAGAGTGGAAGTTCGATACTTTGTGCGATCTCTATGATACCCTTACCATCACCCAAGCTGTTATTTTCTGCAACACAAAGCGGAAGGTGGATTGGCTAACTGAGAAGATGCGTAGCTATAACTTCACAGTCTCCTCAATGCATGGAGACATGCCTCAGAAGGAGCGGGATGCAATAATGGCAGAGTTCAGGTCGGGAACAACCCGTGTTCTAATTACAACGGATGTATGGGCTCGGGGGATTGATGTGCAACAGGTTTCTTTGGTGATCAATTACGACCTTCCAAACAACCGTGAGCTTTACATTCATCGGATAGGTCGTTCTGGTCGTTTTGGACGCAAGGGTGTCGCAATAAACTTTGTCCGCAGTGACGACATCAGGATTCTTAGAGACATAGAGCAGTACTACAGCACACAGATCGACGAAATGCCAATGAATGTGGCCGATCTGATATGA 1212 0.4686 MARRNGPGPVPGVDDDNLVFETSPGVEAITSFDEMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIIKGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAVGDYINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITSKFMTEPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSYNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRSDDIRILRDIEQYYSTQIDEMPMNVADLI* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01271 403 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 386 - -
Eupl02g01271 403 SMART ultradead3 49 246 IPR014001 -
Eupl02g01271 403 Pfam DEAD/DEAH box helicase 55 217 IPR011545 GO:0003676|GO:0005524
Eupl02g01271 403 CDD DEADc_EIF4AIII_DDX48 32 232 - -
Eupl02g01271 403 CDD SF2_C_DEAD 243 373 - -
Eupl02g01271 403 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 403 IPR001650 -
Eupl02g01271 403 Pfam Helicase conserved C-terminal domain 256 364 IPR001650 -
Eupl02g01271 403 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 231 IPR014001 -
Eupl02g01271 403 FunFam Eukaryotic initiation factor 4A-III 237 403 - -
Eupl02g01271 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 386 IPR027417 -
Eupl02g01271 403 Gene3D - 239 403 IPR027417 -
Eupl02g01271 403 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 30 58 IPR014014 GO:0003724
Eupl02g01271 403 SMART helicmild6 283 364 IPR001650 -
Eupl02g01271 403 Gene3D - 22 238 IPR027417 -
Eupl02g01271 403 FunFam Eukaryotic initiation factor 4A-III 13 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01271 Eupl-Chr2 28000983 28012378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01271 12 403 Eukaryotic Initiation Factors Gene Family AT3G19760 89.031 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01271 K13025 - msin:131236855 759.214