LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl02g01265	ATGAATCTCTTGTTCAGGAAGTCAGCTTCCATGGCTTCAATGGCCTCGAAGCAGACTCTCACTGCTTTGATCTCCATAGAAGCTTTTCGTCTTGCTCCATCTGCAACAGCGGCTGAATCTATTAGAAATCGTGATGTTTTTGGCGGTGAAATTCGTTCGTTCTCGTATTATAGGGCACCGGAGAAGCTCGGATACTTTGGTCTTGGAGTTAGAAAATTTCATTTCCTGAATGGTCCGTTGGAATTTAAGGCTTCTCCGGTTGTACAGGCGGAGTACGCAGTCGATGATTTCTCGGACGAGGAGAAGACTTCGGGGAAGAAGGTTAGAGGAGACAGCGAAGAGGGCCTCGAAATCTCCAAGCTTGGGATTTCTCAAGAGATTGTTTCTTCTTTAGCAAAGAAAGGAATCACGAAGCTCTTCCCTATACAGAAAGCTGTGCTGGAACCAGCAATGCAGGGGCGTGACATGATTGGCCGGGCTAGAACAGGAACGGGGAAAACTCTAGCTTTTGGGATGCCCATCTTGGATAGAATCATTCAGTTCAATGCCAAGCATGGACGTGGAAGGAATCCTTTGGCCTTGGTTTTGGCTCCAACCAGAGAACTTGCTCGACAAGTCGAGAAGGAATTCCATGAAACTGCCCCCAACTTGGATACACTGTGTGTTTATGGGGGTGTACCCATATCACGTCAAATGAATACGCTAGATTATGGTGTTGATGTAGTTGTCGGGACACCTGGTCGTATTATTGATCTGCTTAAGAGAGGCGCCTTAGTTTTGTCTGAGGTCCAGTTTGTTGTTCTTGATGAGGCTGATCAGATGCTTGCTGTGGGCTTTGATGAAGACGTAGAAATAATTCTAGACAAGTTACCCCAGAAGCGTCAGAGTATGATGTTCTCTGCTACAATGCCAAGTTGGATAAGAAAGCTTACACAGAAGTACCTCAAAGATCCATTAACTATTGATCTTGTGGGCGATTCTGATCAGAAGTTACCAGAAGGAATCACCCTATATTCAATTGCATCGGACATGTATGGGAAGGCATCAATTATTGGACCTCTAATAACAGAGCATGCAAAAGGAGGGAAATGCATTGTTTTCACTCAAACAAAACGTGACGCTGATCGGTTGGCATGTTCTATGCAACGCAATTTTAGGTGTGAGGCTTTGCATGGGGATATCTCGCAAAATCAGAGGGAAAGGACTCTTTCTGGTTTCCGAGATGGGCAATTCAATATCTTAGTTGCTACTGATGTTGCTTCCCGTGGGCTTGATATACCTAATGTTGATCTTGTGATCCATTACGAGCTTCCAAACTCTTCGGAGATCTTTGTTCATAGATCTGGTCGAACAGGACGTGCTGGGAAGAAAGGTAGCGCAATTCTCATGTATACAGAACAGCAGACCAGGGCTGTTAGGGTCATTGAGCGAGATGTGGGATGCAAGTTTGCAGAGCTCCCAAAGATTGCTGTTGAAGGTGGAAATCGGGACATGTTTGGTGACATGGGAGGTGGTCGATTTGGCTCTAATGCAAGTCCACGAGGTGGTCGTCTGAGTGATTCAGGTTTTGGTCGTTCTGGTGGATTTGGCCGTTCTGGTGGCTTTGGAGGTTCATCATCAGGCCGTACGGGGGGATACGATGAATCTGGTTCGAGTCGTTTTGGTTCCTTTGGTGGATCAGGTTCAGGTCGATCTGGTGGCGGGTTTGGTGGATCTAGCCCGAACCGTTCTAGTAGCTTTGGTGGTTCTGGGTTTGGTCGGTCAGCTGGTTTTGGTGAATCTGGTGGGTCAGGTCGTTCTAGTGGCTTCAGTGATTCCAGTTCTACCCGTTCCAGTGGTGGCTTTGGTGATTCTGGTTCAAGTCGTTTTGGTGGATCCAGTTCGAGCCGTTTTGGTGACTATGGTGATGATCGTGGGAGGAAATCATTTTAA	1932	0.4669	MNLLFRKSASMASMASKQTLTALISIEAFRLAPSATAAESIRNRDVFGGEIRSFSYYRAPEKLGYFGLGVRKFHFLNGPLEFKASPVVQAEYAVDDFSDEEKTSGKKVRGDSEEGLEISKLGISQEIVSSLAKKGITKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGMPILDRIIQFNAKHGRGRNPLALVLAPTRELARQVEKEFHETAPNLDTLCVYGGVPISRQMNTLDYGVDVVVGTPGRIIDLLKRGALVLSEVQFVVLDEADQMLAVGFDEDVEIILDKLPQKRQSMMFSATMPSWIRKLTQKYLKDPLTIDLVGDSDQKLPEGITLYSIASDMYGKASIIGPLITEHAKGGKCIVFTQTKRDADRLACSMQRNFRCEALHGDISQNQRERTLSGFRDGQFNILVATDVASRGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGSAILMYTEQQTRAVRVIERDVGCKFAELPKIAVEGGNRDMFGDMGGGRFGSNASPRGGRLSDSGFGRSGGFGRSGGFGGSSSGRTGGYDESGSSRFGSFGGSGSGRSGGGFGGSSPNRSSSFGGSGFGRSAGFGESGGSGRSSGFSDSSSTRSSGGFGDSGSSRFGGSSSSRFGDYGDDRGRKSF*	644

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl02g01265	643	CDD	SF2_C_DEAD	347	464	-	-
	Eupl02g01265	643	Pfam	DEAD/DEAH box helicase	140	309	IPR011545	GO:0003676\|GO:0005524
	Eupl02g01265	643	SMART	helicmild6	375	455	IPR001650	-
	Eupl02g01265	643	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	350	494	IPR001650	-
	Eupl02g01265	643	CDD	DEADc	127	322	-	-
	Eupl02g01265	643	Gene3D	-	336	496	IPR027417	-
	Eupl02g01265	643	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	476	IPR027417	-
	Eupl02g01265	643	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	116	144	IPR014014	GO:0003724
	Eupl02g01265	643	MobiDBLite	consensus disorder prediction	566	584	-	-
	Eupl02g01265	643	MobiDBLite	consensus disorder prediction	502	643	-	-
	Eupl02g01265	643	SMART	ultradead3	135	338	IPR014001	-
	Eupl02g01265	643	Pfam	Helicase conserved C-terminal domain	348	455	IPR001650	-
	Eupl02g01265	643	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	111	489	-	-
	Eupl02g01265	643	FunFam	ATP-dependent RNA helicase RhlE	107	324	-	-
	Eupl02g01265	643	MobiDBLite	consensus disorder prediction	594	628	-	-
	Eupl02g01265	643	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	147	321	IPR014001	-
	Eupl02g01265	643	Gene3D	-	117	325	IPR027417	-
	Eupl02g01265	643	MobiDBLite	consensus disorder prediction	536	559	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl02g01265	Eupl-Chr2	27630488	27661402	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl02g01265	107	487	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.080	6.28e-65	218

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl02g01265	-		-	nnu:104598327	856.284