Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01199 ATGAGGCTCTCTTCGTCCGGTTTCACTCATCAGACGCAGGAAGGGGAGAAGAGATGTCTGAATTCTGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGCCGTGTAGTCTACTTTCCCCAGGGTCACAGCGAGCAGGTAGCTGCATCAACCAACAAGGAAGTCGATGCCCACATCCCCAACTACCCAAGCTTACCTCCACAACTGATCTGCCTGCTTCACAATGTGACTATGCATGCAGATGTGGAGACAGATGAAGTATATGCGCAAATGACCTTGCAACCACTGAGTCCGCAAGGGCAAAAGGATGCGTACCTACCTGCAGAGCTGGGTACCCCCAGCAAACAGCCAACTAATTATTTTTGTAAGACATTGACTGCAAGTGATACTAGTACTCATGGAGGATTCTCTGTTCCTCGACGAGCAGCTGAAAAGGTCTTTCCTCCATTGGACTTCACCCAGCAGCCTCCCGCTCAAGAGTTGATTGCAAGGGATCTTCATGATAATGAATGGAAATTTAGACATATTTTTCGCGGTCAACCCAAGAGGCATCTTCTCACGACGGGTTGGAGTGTTTTCGTAAGTGCAAAAAGACTTGTTGCTGGCGATTCAGTCCTTTTTATCTGGAACGAAAAGAATCAGTTACTCCTGGGAATCCGGCGTGCTAATCGGCCACAAACTGTGATGCCCTCGTCAGTTTTATCAAGCGACAGCATGCACATAGGACTCCTTGCTGCAGCGGCTCATGCAGCTGCCACGAATAGCCGATTCACTATATTTTATAACCCAAGGGCTAGTCCATCAGAATTTGTCATACCTCTAGCCAAGTATGCCAAAGCAGCCTATCATACCCGTGTTTCTGTTGGCATGCGCTTTCGGATGCTGTTTGAGACGGAGGAGTCAAGTGTCCGCCGGTACATGGGCACAATTACTGGCATAAGTGACTTAGATCCCATTCGTTGGCCAAGCTCGCATTGGCGTTCTGTGAAGGTCGGTTGGGATGAGTCAACAGCGGGGGAGAGACAACCGAGAGTATCTTTGTGGGAGATTGAACCATTAACAACATTCCCAATGTATCCATCACCATTCCCCCTCAGACTTAAGCGACCATGGCCGCCAGGACTACCCTCTCTCCATGTCGGCAAGGATGATGATCTGGGCATTAGTTCTCCACTCATGTGGCTTCGAGGGGATGGAGGAGACAGGGGGATTCAATCTCTAAATTTCCAGGGAGTTGGAGTTTCACCATGGATGCAGCCAAGACTTGATGCTTCTATGCTTGGTCTGCAACCTGACATGTATCAAGCAATGGCTGCTGCAGCGCTTCAGGAAATGAGGACTGCGGATCCTTCTAAACAGGCACCAATGTCCCTTCTACAATTCCAGCAACCCCAGAATCTCCCCAACATATCTGATTTAGTACAGAGGCAGATGTTGTCACAGTCCCAGCCTCAACATGCCTTTCTTCAAAGCATTCAAGTAAACCAGACCCAGATTCAGGTTCAAGCTCAGGCTCAGGCTCAGGCTCAGCTTCTTCACCAGCAGTTGCAGAACCGCCACCCATTTAACGATCAACAGCAGCAGCAGCAACAGCAGCAGCAATTTTCTGATCAACAACAGATCCCGAATGTTGTCTCTGCCCTGTCTCAACTTGCCTCAGCCTCTCAGTCCCAGTCTCCATCTTTACATACCATTTCTTCACTGTGCCATCAGCAGAGCTTTCCAGACTCCAATGGGAGTCCTGTAACTACATCCGGTGTTTCTTCCATGCACAGTCTTTTGGGCTCCTTCTCTCAGGAAGAAACATCCCACCTGCTTAGCTTGCCAAGAACCAACCCACCAGTCCCTTCTGCTGGTTGGTTAGCCAAGCGAGTTGCGGTTGATTCTCTGCTCCCTTCTGGAGCAGCTCCATGTGTTCTATCCCAGGTGGAACAGTTGGTCCCTCCACAGACTATCATCTCTCAACATTCTATCTCATTGCCACCATTTCCTGGTAGAGAATGCTCAGTGGACCAAGAGGGTAGCACAGATCCCCAGAGCCATCTTCTGTTTGGGGTTAATATAGATTCGTCATCACTTCTGATGCAAAATGGGATGTCCAGCCTTAGAGGTGTTGGCTGTGAGAGTGATTCAACAACCATGCCATTTCCTGCTGCTAATTTTCTCAGTGCTGCAGGCACTGATTTCCCGCTTAACCCAGCCATGACAACTTCTAGTTGCTTAGATGAATCTGGGTTTCTGCAGTCTCCGGAGAATGTGGGCCAAGTGAACCCACCAACTAGAACCTTTGTGAAGGTTCACAAGTCGGGGTCCTTCGGGAGGTCACTGGATATATCCATGTTCAGCAGTTATAAAGAGCTGCGCGGTGCGCTCGCTCGCATGTTTGGCCTCGAAGGCCAGTTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTCGTCGACCGGGAGAATGATGTTCTTCTCCTCGGTGATGATCCCTGGCAGGAGTTTGTAAACAATGTGTGGTGTATCAAGATACTCTCGCCTCAAGAAGTGCAACAGATGGGCAAACAAGGCCTCGAGCTTCTGAACTCAGTCCAGAGGCTTTCCAGTGGCAGCTGTGACGACTATGTGAGCCGACAGGATTCAAGAAATTTGAGCACAGGGATCACGTCCGTTGGGTCTTTGGACTACTGA 2697 0.4972 MRLSSSGFTHQTQEGEKRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICLLHNVTMHADVETDEVYAQMTLQPLSPQGQKDAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAAYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPIRWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSLHVGKDDDLGISSPLMWLRGDGGDRGIQSLNFQGVGVSPWMQPRLDASMLGLQPDMYQAMAAAALQEMRTADPSKQAPMSLLQFQQPQNLPNISDLVQRQMLSQSQPQHAFLQSIQVNQTQIQVQAQAQAQAQLLHQQLQNRHPFNDQQQQQQQQQQFSDQQQIPNVVSALSQLASASQSQSPSLHTISSLCHQQSFPDSNGSPVTTSGVSSMHSLLGSFSQEETSHLLSLPRTNPPVPSAGWLAKRVAVDSLLPSGAAPCVLSQVEQLVPPQTIISQHSISLPPFPGRECSVDQEGSTDPQSHLLFGVNIDSSSLLMQNGMSSLRGVGCESDSTTMPFPAANFLSAAGTDFPLNPAMTTSSCLDESGFLQSPENVGQVNPPTRTFVKVHKSGSFGRSLDISMFSSYKELRGALARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWCIKILSPQEVQQMGKQGLELLNSVQRLSSGSCDDYVSRQDSRNLSTGITSVGSLDY* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01199 898 SMART B3_2 127 229 IPR003340 GO:0003677
Eupl02g01199 898 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Eupl02g01199 898 Gene3D - 125 228 IPR015300 -
Eupl02g01199 898 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 857 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl02g01199 898 FunFam Auxin response factor 291 363 - -
Eupl02g01199 898 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Eupl02g01199 898 Gene3D - 291 363 - -
Eupl02g01199 898 Gene3D - 764 856 - -
Eupl02g01199 898 FunFam Auxin response factor 125 229 - -
Eupl02g01199 898 FunFam Auxin response factor 762 856 - -
Eupl02g01199 898 SUPERFAMILY CAD & PB1 domains 759 841 - -
Eupl02g01199 898 ProSiteProfiles PB1 domain profile. 767 851 IPR000270 GO:0005515
Eupl02g01199 898 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Eupl02g01199 898 CDD B3_DNA 126 227 IPR003340 GO:0003677
Eupl02g01199 898 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl02g01199 898 Pfam AUX/IAA family 761 853 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01199 Eupl-Chr2 23947742 23961304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01199 97 859 B3 DNA Binding Superfamily AT5G37020 54.005 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl02g01199 AUX_IAA 7.6e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01199 - - ming:122064106 1479.54