Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01164 ATGGCTGCCGTTGCAGAGAATGGGATTGGGTCTGACGATCAGTTCCTCCATCATCATCATCATCATCACCATCATCATCGACCATCTCCTGCAGTTATTTCTGCTCCTTCTTCTGTTGATGATGAGGATGATGGCGCTCCTCTTGCTTCTGATCCCAAATCTGAATTTCAAAGAGACGTGCGGAAGCTCGTCGATTTGCTCTCGAAATTGAACCCATCGGCCAAGGAATTTTTTCCTTCTTCTTACTCACCTGATCGTCAATCACCACCATTCAATCTCTACTCCCTTCTCTCTGGGGATCATAAGGATTCCAGCAGCGATGTGTCCTCTAATAATCGAAGGAAGAAGATTAACTATAATCAGGGGAGGAAGAGATTGAATGGGAGAACTCTTAGAGCTCAAAGAGAAGATAGCATTAGGCGAACTGTATATGTTTCTGATATTGATCAGCATGTCACTGAAGAACAGCTTGCTGCATTATTTATTAATTGTGGTCAAGTAGTTGACTGTCGTGTTTGTGGCGATCCCCATTCAGTTCTCCGTTTTGCATTTATAGAGTTTGCTGATGAGCATGGTGCAAGAGCAGCTCTAGATCTTGCTGGGACCATGCTAGGTTACTATCCTGTCAGAGTTTTACCTTCGAAAACTGCTATTTTGCCTGTGAATCCGACATTCCTTCCTAGGTCCGAAGATGAACGAGAAATGTGTGCCAGGACGGTCTACTGTACGAATATTGATAAGAAGGTTTCACAAACTGATGTTAAAGTTTTCTTTGAATCAATCTGTGGTGAGGTTTCCCGCCTGAGGCTTCTGGGGGATCATGTGCATTCAACTCGCATTGCATTTGTTGAGTTTACCATGGCAGAAAGCGCCATTCTTGCACTGAATTGCAGTGGCATGGTGTTGGGAACCCTCCCCGTTAGGGTAAGTCCTTCGAAGACACCGGTGAGGCCTCGAGTACCTCGCTCAATGTTGCACTAA 981 0.4506 MAAVAENGIGSDDQFLHHHHHHHHHHRPSPAVISAPSSVDDEDDGAPLASDPKSEFQRDVRKLVDLLSKLNPSAKEFFPSSYSPDRQSPPFNLYSLLSGDHKDSSSDVSSNNRRKKINYNQGRKRLNGRTLRAQREDSIRRTVYVSDIDQHVTEEQLAALFINCGQVVDCRVCGDPHSVLRFAFIEFADEHGARAALDLAGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNIDKKVSQTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFTMAESAILALNCSGMVLGTLPVRVSPSKTPVRPRVPRSMLH* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01164 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 314 IPR000504 GO:0003723
Eupl02g01164 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 205 IPR000504 GO:0003723
Eupl02g01164 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 303 IPR000504 GO:0003723
Eupl02g01164 326 SUPERFAMILY RNA-binding domain, RBD 110 217 IPR035979 GO:0003676
Eupl02g01164 326 FunFam Polyadenylate-binding protein-interacting protein 10 232 310 - -
Eupl02g01164 326 MobiDBLite consensus disorder prediction 1 54 - -
Eupl02g01164 326 MobiDBLite consensus disorder prediction 77 96 - -
Eupl02g01164 326 Gene3D - 226 319 IPR012677 -
Eupl02g01164 326 Gene3D - 98 217 IPR012677 -
Eupl02g01164 326 SMART rrm1_1 142 212 IPR000504 GO:0003723
Eupl02g01164 326 SMART rrm1_1 239 310 IPR000504 GO:0003723
Eupl02g01164 326 CDD RRM1_CID8_like 139 218 IPR034823 -
Eupl02g01164 326 FunFam Polyadenylate-binding protein-interacting protein 11 105 218 - -
Eupl02g01164 326 SUPERFAMILY RNA-binding domain, RBD 229 320 IPR035979 GO:0003676
Eupl02g01164 326 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 66 319 - -
Eupl02g01164 326 Pfam Ataxin-2 C-terminal region 68 81 IPR009818 -
Eupl02g01164 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 216 IPR000504 GO:0003723
Eupl02g01164 326 CDD RRM2_CID8_like 234 315 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01164 Eupl-Chr2 20518559 20532714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01164 125 295 Eukaryotic Initiation Factors Gene Family AT1G34140 24.862 1.97e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01164 - - nnu:104613486 496.508