Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01115 ATGGTGACTTTCAGGTTTCACCAGTACCAGGTGGTTGGGAGAGCGCTCCCTTCCGAATCAGATGAGCATCCAAAGATCTACCGGATGAAACTCTGGGCCACGAACGAGGTTCGTGCCAAATCGAAGTTCTGGTATTTCTTGAGGAAGCTCAAGAAAGTCAAGAAGAGCAATGGGCAAGTGCTGGCGATCAATGAGAGTAGGACTGGATATCACAACATGTACAAGGAATACCGAGACACCACTCTTAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTGAGATTTCCATGCATCCAAATTATCAAGACGGCCACCATCCCAGCCAAGCTTTGCAAAAGGGAAAGCACCAAGCAGTTCCACAAGAAGGACATCAAGTTTCCCATGGTTTTCCAGAAGGTTAGGCCACCAACTCGAAAGCTCAAAACCACATACAAGGCGTCGAGGCCTAACATGTTCAAGTTTGCTTGTTCAAGCTTGTTTTGGTGGTTAAGGCAGGTGCTTGTTTCAATGGCACAAGAGCCTGCAATCCCAAAAGAGCAGGTTGTTCTTGGAGAAGAAGTAAACCATGTGAGACTGATCACCTTGAACCGGCCTCGGCAATTGAATGTCATTTCATCCAAAGTGGTTTCTCTGCTAGCTGAGTACCTAGAGAAATGGGAGAAAGATTATGAAGCAGAGCTTGTGATAATCAAGGCCACTGGACGAGCTTTTTCCGCTGGTGGGGATTTAAAAATGTTCTATGATGGGAGGAAGTTAGATGATTCCTGTCTTGAGGTTGTGTACAGAATGTATTGGCTGTGCTATCACAATCACACCTATAAGAAAACTCGGGTGGCTCTTGTTAATGGAATTTCTATAGGTGGAGGTGCATCTCTGATGGTTCCATCGAATTTCTCTGTTGTCACAGAGAAGGCTGTTTTTGCCGTGCCTGAAGCGAGTATTGGGTTTCACACTGACTGCAGCTTCTCTTACATTCTTTCACATCTCCCTGGGCATTTGGGGGAATACTTGGGCTTAACAGGTGCAAGACTGAATGGGAAGGATTTGATTGCAGCTGGTCTTGCAACCCACTTTGTCCCTTCTGAGAAACTGCCCGAGCTTGAGAAGCGCCTGATAGATTTGAACTCGGGTGATGAGCATGCGGTCAAATCGGTGATTGAGGAATTTTCTTTGGATGTTAAACCTGATGACAAAAGTATTTTACACAAGCAGTCAACAATCAACAAGTGCTTCTCCAAGGAGTTCATGGAGGAGATTATAAAATCCTTTGAAGCTGAGGCAAGCAACAAGGGAAATGGGTGGATAGGTGCTGCACTCGAGCAATTGAAGAGATCGTCTCCAACAGGACTGAAGATGACATTAAGATCAATTCGAGAAGGAAGGAAGCAAACTCTGTCGGAGTGCCTGAAGAAGGAATTCAGACTCACAATGAACATACTACGGACCACAATTTCTTGCGATTTCTATGTGGGCATTCGAGCTCTAACCATTGATAGAGAAAACACTCCAAAGTGGAACCCAGCGAGACTTGAAAATGTGAGCATTGAGACAGTGGACTTGGTTTTCCAGCCATTCAAAGAAGAACTGGAGCTCCACATTCCCACCAAAGAAGAGAGCAGGTGGGATGGGAAGTATGAGAATTCGGTTTATCCAAGCTTAAAGGCAATGACCATCCGAAATAATTACTAA 1707 0.454 MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINESRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHKKDIKFPMVFQKVRPPTRKLKTTYKASRPNMFKFACSSLFWWLRQVLVSMAQEPAIPKEQVVLGEEVNHVRLITLNRPRQLNVISSKVVSLLAEYLEKWEKDYEAELVIIKATGRAFSAGGDLKMFYDGRKLDDSCLEVVYRMYWLCYHNHTYKKTRVALVNGISIGGGASLMVPSNFSVVTEKAVFAVPEASIGFHTDCSFSYILSHLPGHLGEYLGLTGARLNGKDLIAAGLATHFVPSEKLPELEKRLIDLNSGDEHAVKSVIEEFSLDVKPDDKSILHKQSTINKCFSKEFMEEIIKSFEAEASNKGNGWIGAALEQLKRSSPTGLKMTLRSIREGRKQTLSECLKKEFRLTMNILRTTISCDFYVGIRALTIDRENTPKWNPARLENVSIETVDLVFQPFKEELELHIPTKEESRWDGKYENSVYPSLKAMTIRNNY* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01115 568 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 109 IPR023573 GO:0003735|GO:0005840|GO:0006412
Eupl02g01115 568 SUPERFAMILY RplX-like 60 127 - -
Eupl02g01115 568 Gene3D - 64 128 - -
Eupl02g01115 568 Pfam Enoyl-CoA hydratase/isomerase 196 528 IPR045004 -
Eupl02g01115 568 Gene3D - 183 543 - -
Eupl02g01115 568 CDD crotonase-like 188 378 - -
Eupl02g01115 568 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 184 544 IPR032259 GO:0003860
Eupl02g01115 568 FunFam 60S ribosomal protein L18a 1 69 - -
Eupl02g01115 568 Gene3D - 4 63 - -
Eupl02g01115 568 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Eupl02g01115 568 FunFam Probable 3-hydroxyisobutyryl-CoA hydrolase 2 182 543 - -
Eupl02g01115 568 SUPERFAMILY ClpP/crotonase 184 511 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01115 Eupl-Chr2 18267537 18283847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01115 1 158 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 79.096 2.19e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01115 K05605 - csin:114295508 613.224