LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl02g01085	ATGATGGGACTAAGAAATCTGCTGCAATGGAAGAGCATGGCGAAGGAAGTATTGGATCGAACAATGATCGTAGGGAAGTTCTTCTGCTTCCTCCATGTCACCAACACCTATATCTGCAACGTTACTCTCGTATTGGGTCCCAGTATGCTCCCGACCCTGAATCTAATGGGCGACCTGCTTTTGGTGGAACGGATATCGATCCGGCTAGAGAGGGTGGGTCCCGGGGATCTCGTCCTCGTTCGCTCACCTGAAAACCCTAGAAGGATTCTCACGAAGCGCGTTATGGGTGTGGAAGGCGACCGGGTCACGTTCCTCGTCGACCCCGAGTACACCGACAGATGCCACACTGTAGTCGTACCAAAGGGGCACATTTGGATTCAGGGGGATAACATTTACGCGTCGAACGATTCACGACATTTCGGGCCTGTCCCTTATGGTCTTCTTCAAGGCAAAGTGTTTTGCAGGATATGGCCGCCTGATGGTTTTGGATCATTGGGGTAA	501	0.517	MMGLRNLLQWKSMAKEVLDRTMIVGKFFCFLHVTNTYICNVTLVLGPSMLPTLNLMGDLLLVERISIRLERVGPGDLVLVRSPENPRRILTKRVMGVEGDRVTFLVDPEYTDRCHTVVVPKGHIWIQGDNIYASNDSRHFGPVPYGLLQGKVFCRIWPPDGFGSLG*	167

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl02g01085	166	Pfam	Signal peptidase, peptidase S26	113	157	IPR019533	GO:0004252\|GO:0006465
	Eupl02g01085	166	Pfam	Signal peptidase, peptidase S26	27	104	IPR019533	GO:0004252\|GO:0006465
	Eupl02g01085	166	Gene3D	Umud Fragment, subunit A	34	163	-	-
	Eupl02g01085	166	CDD	S26_SPase_I	41	152	IPR019533	GO:0004252\|GO:0006465
	Eupl02g01085	166	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	9	165	-	-
	Eupl02g01085	166	SUPERFAMILY	LexA/Signal peptidase	36	165	IPR036286	-
	Eupl02g01085	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	119	138	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Eupl02g01085	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	90	102	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Eupl02g01085	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	37	53	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Eupl02g01085	166	FunFam	Inner membrane protease subunit 1	35	164	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl02g01085	Eupl-Chr2	16948258	16952898	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl02g01085	49	166	MADS-box Gene Family	AT1G29960	52.542	9.75e-43	137

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl02g01085	K09647		-	nnu:104585962	272.322