Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01053 ATGAAACCCAACAACAACAAGAACAAAGCAATTGCTCAGTACAATGCAGATGCAGGGCTCCTTGCTGTGTTTGAGCAATCTGGGGTATCAGGTAAGTCATTTGACTACTCAAAATCAGTTAAATCTGCACCAGATTCTGTTCCTGAAGAACAGATTACTGCTTATCTCTCTAGAATCCAAAGGGGTGGTCTCATCCAGTCATTTGGTTGCATGATTGCGATTGAAGAACCAACCTTCACAATCATTGCTTACAGTGAAAATACAATTGATTTGTTGGGTCTCAATAACAGTCTAGGACTAGAATCCAAACTCTTCAACCAGGGTCTGCTTGGCTGCGACGCCCGAACCCTTTTCACCCCTTCGTCCGGAGCGTCTCTGGCAAAAGCCGCTACCTCCAGAGAGATTTCACTCTTAAACCCCATATGGGTTCATTCCAGAAATACCCAGAAACCACCATTTTACGCCATACTCCACAGAATTGATGTGGGAATTGTGATCGACTTGGAGCCCGCGCGGTCGGGTGACCCTGCATTCTCAATTGCCGGTGCGGTGCAGTCGCAGAAACTCGCTGTTCGGGCAATTTCTCGGCTGCAGTCGCTTCCTGGAGGAGATATTGGTGTCTTGTGCGATACGGTTGTGGAAGATGTTCAGGAGCTTACTGGGTATGATAGGGTCATGGTTTATAAGTTCCATGAGGACGAGCATGGCGAGGTGGTGTCGGAGATCAGGAGATCCGATTTGGAGCCCTATTTGGGTTTGCATTATCCTTCTACAGATATCCCTCAGGCTGCTCGTTTCTTGTTTAAGCAGAACCGTGTCAGGATGATCTGTGATTGCAACGCGAATCCTGTCAATATCATTCAGAGTGAAGAGTTGAAGCAACCCCTGTGCTTGGTCAATTCGACTCTCCGATCTCCCCATGGTTGCCACACACAGTACATGGCTAACATGGGCTCCATTGCTTCATTGACGATGGCAGTTGTTGTCAATGGGAACGACTCAACAAGGCTTTGGGGGTTGGTTGTCTGCCACCACAGTTCGCCCCGCTATGTTCCATTTCCCCTTCGCTATGCTTGCGAGTTTCTCATGCAGGCTTTTGGGCTGCAGTTGAACATGGAGCTTCAATTGGCATCACAGCTGGCGGAGAAGAAGATACTTAGAACACAGACCTTGTTATGTGACATGCTTCTCAGGGACGCCCCATTCGGGATAGCGACTCAGTCCCCAAACATCATGGACCTCGTGAAGTGTGACGGGGCTGCATTGTACTATGGCGGGATGTGTTGGTTGTTGGGTGTTACACCAACCAAAGCACATATAAAGGATATCGCGGATTGGTTGCTTACTTGTCATGGGGACTCAACAGGATTGAGTACAGATAGTTTAGCTGATGCTGGTTACCCAGGTGCAGCTCTGCTTGGTGATGCAGTATGTGGTATGGCTACTGCAAGGATTACTTCAAAGGACTTCTTGTTCTGGTTTAGGTCTCACACTGCAAAGGAAGTCAAATGGGGAGGAGCAAAGCATCATCCCGAGGAGAAAGATGATGGTGGAAGAATGCACCCCAGGTCATCATTTAAGGCTTTTCTTGAAGTGGTAAAAAGTAGGAGTTTGCCTTGGGAGATTTCAGAGATGAATGCTATTCACTCGCTACAGCTTATCATGCGAGGTTCGTTTCAGGATGTTGAGGACAGTGGTGCTAAGTCATTGATCCATGCCCAACAGAATGATTTGAAGATGCGGGGGATGCAAGAACTCAGTTCGGTGGCATGTGAGATGGTCAGACTGATTGAGACAGCAACGGCCCCGATCTTTGCTGTTGATTCAGCTGGGCTCATAAATGGATGGAATGCTAAAACTGCTGAGTTGACGGGGTTAGCAGCAAGTGAAGCTATGGGGCAGTCCCTGGTTAATGAACTTGTCCATGAGGAATCTCGTGTAGTTGTTGAAAATCATCTATCCCGAGCTTTGAAAGGTGAGGAGGATAAACATGTTGAGTTAAGATTGAGGACTTTTGGTTTGCAGCAGCAGAATGGGGCTGTATTTATTGTGGCCAATGCCTGCTCAAGTAAGGATTATACAAACAGTATCATTGGAGTTTGCTTTGTGGGTCAAGATGTCACTGAGGAGAAAGTCGTCATGGATAAATTTGTCCGCTTGCAAGGGGATTACAAGGCTATCATAGAGAGTCTTTATCCATTGATCCCACCCATATTTGCTTCAGATGAGAATGCCTGCTGCTCTGAGTGGAATGCAGCACTGGAAAAGCTAAGTGGTTGGACCAGGGAGGAGGTTATTGGAAAAATGCTTCTCGGGGAAATCTTCGGGGATTTCTGTCAGCTGAAAGGTCAAGATTCGCTTACTAAATTTATGATTCTCTTGTACCGTGCAATTGGCGGCCAAGATACCAAGAACTTCCCATTTGCTTTTTTTGATAGGAAAGGGAAATACGTGGAGGTTCTCTTAACAGCAAATAAGAGGATTGATATGAGTGGGCATATAATTGGGTGTTTCTGCTTCCTGCAGACTGTAGTGCCAGACAGTTCGCAGTCCTTAGAAGTACAAAGGCAACAGGAGGGGAAGTGCTTTGCAAAACTTAAGGAGTTGGCATACATTCGACAAGAGATGAAAAATCCTTTGAATGGAATTCGGTTTACGCACAAACTCCTGGAGACTACTTCTGTTTCAGATGATCAGAAGCAGATTCTTGAGACTAGTGATGCATGTGAAAGGCAGATGATGGCAATCATAGATGATATGGATTTAGAAAGTATAGAGGGTTGTATGGAGCTAAACATGGTGCAGTTTCTGTTGGGAAGTGTTATGGATGCCGTTGTTAGTCAAGTAATGATTTTGTTGAGGGAAAAGAATTTACAGCTAATTCAAGAGATTCCAGAGAAAATCAAAACACTATCTCTATACGGTGATCAAATTAGACTTCAGCAAGTCTTGTCAGATTTCTTGTTGAATGTAGTGCATCATGCACCATCTTCAGATAGCTGGGTAGAAATCAAGGTTGCACCCAGTTTAAAGATGATCCATAATGGGATTGAGCTAGTGCGTTTACAGTTCAGAATGACTCACCCTGGTCAGGGCCTCCCTCCTGAACTTGTCCAAGATATGTTTGAGGGGGGAACTCAATGGTCTACACAGGAAGGCCTTGGACTAAGCATGTCCCGGAAGCTTCTCAAGATGATGAATGGTCATGTCCATTATGTCAGGGAGCCTAGCAAGTGCTACTTCCTCATTGACATTGAATTTCACACAACTCGAACGAGAAGCTAG 3285 0.4572 MKPNNNKNKAIAQYNADAGLLAVFEQSGVSGKSFDYSKSVKSAPDSVPEEQITAYLSRIQRGGLIQSFGCMIAIEEPTFTIIAYSENTIDLLGLNNSLGLESKLFNQGLLGCDARTLFTPSSGASLAKAATSREISLLNPIWVHSRNTQKPPFYAILHRIDVGIVIDLEPARSGDPAFSIAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEDVQELTGYDRVMVYKFHEDEHGEVVSEIRRSDLEPYLGLHYPSTDIPQAARFLFKQNRVRMICDCNANPVNIIQSEELKQPLCLVNSTLRSPHGCHTQYMANMGSIASLTMAVVVNGNDSTRLWGLVVCHHSSPRYVPFPLRYACEFLMQAFGLQLNMELQLASQLAEKKILRTQTLLCDMLLRDAPFGIATQSPNIMDLVKCDGAALYYGGMCWLLGVTPTKAHIKDIADWLLTCHGDSTGLSTDSLADAGYPGAALLGDAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEEKDDGGRMHPRSSFKAFLEVVKSRSLPWEISEMNAIHSLQLIMRGSFQDVEDSGAKSLIHAQQNDLKMRGMQELSSVACEMVRLIETATAPIFAVDSAGLINGWNAKTAELTGLAASEAMGQSLVNELVHEESRVVVENHLSRALKGEEDKHVELRLRTFGLQQQNGAVFIVANACSSKDYTNSIIGVCFVGQDVTEEKVVMDKFVRLQGDYKAIIESLYPLIPPIFASDENACCSEWNAALEKLSGWTREEVIGKMLLGEIFGDFCQLKGQDSLTKFMILLYRAIGGQDTKNFPFAFFDRKGKYVEVLLTANKRIDMSGHIIGCFCFLQTVVPDSSQSLEVQRQQEGKCFAKLKELAYIRQEMKNPLNGIRFTHKLLETTSVSDDQKQILETSDACERQMMAIIDDMDLESIEGCMELNMVQFLLGSVMDAVVSQVMILLREKNLQLIQEIPEKIKTLSLYGDQIRLQQVLSDFLLNVVHHAPSSDSWVEIKVAPSLKMIHNGIELVRLQFRMTHPGQGLPPELVQDMFEGGTQWSTQEGLGLSMSRKLLKMMNGHVHYVREPSKCYFLIDIEFHTTRTRS* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01053 1094 ProSitePatterns Phytochrome chromophore attachment site signature. 304 313 IPR013516 -
Eupl02g01053 1094 Gene3D PAS domain 736 845 - -
Eupl02g01053 1094 Pfam Phytochrome region 387 560 IPR013515 GO:0006355|GO:0009584
Eupl02g01053 1094 FunFam Phytochrome 736 844 - -
Eupl02g01053 1094 Gene3D PAS domain 590 711 - -
Eupl02g01053 1094 SUPERFAMILY PYP-like sensor domain (PAS domain) 737 839 IPR035965 -
Eupl02g01053 1094 SUPERFAMILY PYP-like sensor domain (PAS domain) 595 702 IPR035965 -
Eupl02g01053 1094 SMART HKATPase_4 975 1087 IPR003594 -
Eupl02g01053 1094 FunFam Phytochrome 926 1093 - -
Eupl02g01053 1094 Pfam GAF domain 204 374 IPR003018 GO:0005515
Eupl02g01053 1094 SUPERFAMILY GAF domain-like 184 371 - -
Eupl02g01053 1094 FunFam Phytochrome 585 717 - -
Eupl02g01053 1094 SUPERFAMILY GAF domain-like 382 561 - -
Eupl02g01053 1094 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 204 364 IPR016132 -
Eupl02g01053 1094 ProSiteProfiles Histidine kinase domain profile. 871 1089 IPR005467 -
Eupl02g01053 1094 CDD PAS 600 671 IPR000014 -
Eupl02g01053 1094 Gene3D - 927 1091 IPR036890 -
Eupl02g01053 1094 Gene3D - 379 552 IPR043150 -
Eupl02g01053 1094 Gene3D - 847 926 - -
Eupl02g01053 1094 CDD HATPase_Phy-like 974 1087 IPR044767 -
Eupl02g01053 1094 Pfam PAS fold 592 707 IPR013767 GO:0006355
Eupl02g01053 1094 Pfam PAS fold 723 843 IPR013767 GO:0006355
Eupl02g01053 1094 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 931 1078 IPR036890 -
Eupl02g01053 1094 SUPERFAMILY PYP-like sensor domain (PAS domain) 59 173 IPR035965 -
Eupl02g01053 1094 Gene3D - 185 535 IPR029016 -
Eupl02g01053 1094 Pfam His Kinase A (phospho-acceptor) domain 867 927 IPR003661 GO:0000155|GO:0007165
Eupl02g01053 1094 Pfam PAS fold 54 171 IPR013654 GO:0006355
Eupl02g01053 1094 FunFam Phytochrome 379 509 - -
Eupl02g01053 1094 SMART gaf_1 204 384 IPR003018 GO:0005515
Eupl02g01053 1094 SMART pas_2 591 658 IPR000014 -
Eupl02g01053 1094 SMART pas_2 722 792 IPR000014 -
Eupl02g01053 1094 SMART HisKA_10 864 928 IPR003661 GO:0000155|GO:0007165
Eupl02g01053 1094 ProSiteProfiles PAS repeat profile. 589 660 IPR000014 -
Eupl02g01053 1094 NCBIfam PAS domain S-box protein 737 840 IPR000014 -
Eupl02g01053 1094 NCBIfam PAS domain S-box protein 596 711 IPR000014 -
Eupl02g01053 1094 CDD HisKA 864 920 IPR003661 GO:0000155|GO:0007165
Eupl02g01053 1094 PRINTS Phytochrome signature 219 238 IPR001294 GO:0006355|GO:0009584
Eupl02g01053 1094 PRINTS Phytochrome signature 705 725 IPR001294 GO:0006355|GO:0009584
Eupl02g01053 1094 PRINTS Phytochrome signature 489 508 IPR001294 GO:0006355|GO:0009584
Eupl02g01053 1094 PRINTS Phytochrome signature 404 424 IPR001294 GO:0006355|GO:0009584
Eupl02g01053 1094 PRINTS Phytochrome signature 304 325 IPR001294 GO:0006355|GO:0009584
Eupl02g01053 1094 PRINTS Phytochrome signature 522 540 IPR001294 GO:0006355|GO:0009584
Eupl02g01053 1094 PRINTS Phytochrome signature 611 626 IPR001294 GO:0006355|GO:0009584
Eupl02g01053 1094 PRINTS Phytochrome signature 118 140 IPR001294 GO:0006355|GO:0009584
Eupl02g01053 1094 PRINTS Phytochrome signature 592 608 IPR001294 GO:0006355|GO:0009584
Eupl02g01053 1094 PRINTS Phytochrome signature 685 702 IPR001294 GO:0006355|GO:0009584
Eupl02g01053 1094 Gene3D PAS domain 58 307 - -
Eupl02g01053 1094 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 975 1076 IPR003594 -
Eupl02g01053 1094 CDD PAS 734 842 IPR000014 -
Eupl02g01053 1094 PIRSF Phytochrome_conventional 1 1094 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Eupl02g01053 1094 PANTHER OS08G0260000 PROTEIN 50 926 - -
Eupl02g01053 1094 ProSiteProfiles PAS repeat profile. 720 775 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01053 Eupl-Chr2 16088332 16112239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01053 1 1089 Histidine Kinase Gene Family AT4G18130 64.759 0.0 1481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01053 K12123 K12121 msin:131240792 1780.76