Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01052 ATGGAGCCGTCTTCAGATCATTCATTCTCAGGCGTATCCAAAGGTTCCAAGATTCCATCATTGAATATTCCTCAAAAAGTGAATGGTGGTGGTGCATGGGGGATTCCATCTGGATCTGATGCATATCATGCATCAAGTGATGCTAGCCTATTTTCAACCTCATTACCCGTTCTTCTTCGTGAAAAGTTGACAAGGATGGAGGGTGGTAAGGAATCTCTTGAAGATGTTGGAGTGCACACAGTTGGAAGCCTTCTTCCTGATGATGAGGATGAACTTTTAGCTGGTATAATGGATGATTTTGACCTAAGTGGGTTGCCTAGTCAATTGGAGGACTTGGAAGATTATGATTTTTTTGGGAGTGGAGGGGGTATGGAATTGGATTTTGACCTTCAGGACAGCCTGAGTGCGGTCATGTCAAAGATAAGTATATCCGATGGTGTTGCTGGCAATGGGACCAACCAATATGGACTTCCAAATGGTGTGGGAGCAGTTGCTGGGGAACATCCGTATGGGGAGCATCCTTCTAGAACATTATTTGTGCGGAATATCAATAGTAACGTTGAGGACTCGGAACTGAAAGCTCTCTTTGAGCAATATGGTGCTATCAGGACTCTTTACACTGCATGCAAACACCGGGGCTTTGTGATGATTTCTTACTATGATATCCGGGCTGCTCGGACTGCAATGCGTGCATTGCAAAATAAGCCTCTACGACGGAGAAAACTTGACATTCATTTTTCAATTCCAAAGGATAACCCATCAGACAAGGATATTAACCAAGGGACTCTTGTGGTTTTTAATTTGGATCCATCGGTCTCAAATGATGATCTCCGACAAATATTTGGGGCTTACGGGGAAGTCAAAGAGATAAGGGAGACACCACACAAGCGGCACCATAAGTTCATTGAGTTTTATGACGTCAGAGCCGCAGAAGCAGCTCTTAGGTCGTTAAATAGGATTGAAATAGCTGGGAAACGCATAAAGCTTGAACCTAGTCGTCCTGGTGGTGCACGTCGGAACTTGATGCAGCAATTGAGTCAAGATCTGGAACCAGATGAAACCGGAAGCTTTCGACATCAAGTGGGTTCACCAATAGCCAATTCTCCTCCAGGTAACTGGGCACAATTCAGCAGCCCAGGTGAGCATAGTCCTTTGCAAGCTCTTACTCAGTCCCCAGGTTTGAGAACTATTAGTCCTATGACCAACAACCATTTGCCTGGATTAGCTTCAATTCTGCCTCCTCTCGTATCAAATCCTGTGAAAATTGCACCTATTGGTAAAGACCAAGGAAGAGTTAGCCATGTGGACCAGGTATTCACCAACACCAATTCGACGCTAGATGCTTCCTTTCAGCATTCACATTCCTTTCCGGAGCCAAACTTGAGAGTAAGTCCTGGAACGGTGACCTCGTTTGGTCTATCAACTTCAAATGCATCTGGTATTGGGACATTGTCTGGGCCCCAGTTTCTTTGGGGCAGTCCCACTCCTTACTCAGAGCACAACAATTCTTCTGCCTGGCCAACACCATCCATGGGACATCCATTTACATCGAATGGACAGAGACAGGGCTTTCCTTACTCTAGTAGGCAGGGATCTTTCCTTGGTTCATCACACCACCATCACCATCATGTTGGATCTGCTCCATCTGGCATTCCTTTCGAGAGGCACTTTGGCTATTTCCCAGAGTCACCAGAGTCATCCTTCATGAGCCCAGTTACTTATGGAGGCATGGGTCTGAGCCACAATGAAGGAAGTTTCATGATGAATATGGGTGCTCGTGCTGCTATGAATGGAGTTGCTCTTTCAGGAAACATGTCTGAAAATGGTTCACCCAGTTTCAGAATGTTGTCCTCACCAAGGCTGGGTCCTATGTTCCTTGGTGGTGGTCCATATCCAGGACCCGGGGCCAACAACATTGAGGGATTGGCTGAACGTGGACGGAGCCGACGAGTTGAGAACAATGGGAATCATATAGACATCAAGAAGCAGTATCAGCTCGACTTGGATAAGATTGTTAGTGGGGAAGATACTCGGACTACTTTAATGATCAAAAACATCCCAAATAAGTACACTTCGAAGATGTTGCTGGCTGCCATTGATGAAAATCATAGGGGTACTTATGATTTTCTCTACTTGCCAATTGATTTTAAGAATAAATGCAATGTGGGGTATGCATTTATCAACATGGTGTCTCCTTCTCACATTATTCCCTTCTATGAGGCTTTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCATTGGCATATGCTCGAATCCAGGGCAAGGCGGCTCTCGTTACCCACTTCCAGAATTCAAGCTTGATGAACGAAGATAAGCGGTGCCGCCCAATTCTCTTCCACTCAGAGGGCCCAGAGGCTGGTGATCAGATCATCCAGGAACCTTTCCCCTTCAACAATTTGAACATCCGTGTGCATCAGCCAGATGGATCTTACTCGGGGGATTCACCGGAGAGCCCTACAAAAGGTAATTCAGGTGAGAAACCCGAGAATATTTAA 2529 0.4555 MEPSSDHSFSGVSKGSKIPSLNIPQKVNGGGAWGIPSGSDAYHASSDASLFSTSLPVLLREKLTRMEGGKESLEDVGVHTVGSLLPDDEDELLAGIMDDFDLSGLPSQLEDLEDYDFFGSGGGMELDFDLQDSLSAVMSKISISDGVAGNGTNQYGLPNGVGAVAGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQYGAIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRSLNRIEIAGKRIKLEPSRPGGARRNLMQQLSQDLEPDETGSFRHQVGSPIANSPPGNWAQFSSPGEHSPLQALTQSPGLRTISPMTNNHLPGLASILPPLVSNPVKIAPIGKDQGRVSHVDQVFTNTNSTLDASFQHSHSFPEPNLRVSPGTVTSFGLSTSNASGIGTLSGPQFLWGSPTPYSEHNNSSAWPTPSMGHPFTSNGQRQGFPYSSRQGSFLGSSHHHHHHVGSAPSGIPFERHFGYFPESPESSFMSPVTYGGMGLSHNEGSFMMNMGARAAMNGVALSGNMSENGSPSFRMLSSPRLGPMFLGGGPYPGPGANNIEGLAERGRSRRVENNGNHIDIKKQYQLDLDKIVSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGPEAGDQIIQEPFPFNNLNIRVHQPDGSYSGDSPESPTKGNSGEKPENI* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01052 842 SMART rrm1_1 177 245 IPR000504 GO:0003723
Eupl02g01052 842 SMART rrm1_1 262 330 IPR000504 GO:0003723
Eupl02g01052 842 SMART rrm1_1 680 756 IPR000504 GO:0003723
Eupl02g01052 842 MobiDBLite consensus disorder prediction 1 22 - -
Eupl02g01052 842 CDD RRM1_MEI2_like 175 251 IPR034453 -
Eupl02g01052 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 334 IPR000504 GO:0003723
Eupl02g01052 842 Gene3D - 165 259 IPR012677 -
Eupl02g01052 842 SUPERFAMILY RNA-binding domain, RBD 680 765 IPR035979 GO:0003676
Eupl02g01052 842 Gene3D - 260 357 IPR012677 -
Eupl02g01052 842 CDD RRM3_MEI2_like 681 766 IPR034454 -
Eupl02g01052 842 FunFam Protein MEI2-like 1 260 355 - -
Eupl02g01052 842 Pfam RNA recognition motif 2 678 774 IPR007201 -
Eupl02g01052 842 MobiDBLite consensus disorder prediction 814 842 - -
Eupl02g01052 842 FunFam MEI2-like protein 5 isoform 2 165 259 - -
Eupl02g01052 842 CDD RRM2_MEI2_like 260 330 - -
Eupl02g01052 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 249 IPR000504 GO:0003723
Eupl02g01052 842 MobiDBLite consensus disorder prediction 496 534 - -
Eupl02g01052 842 PANTHER RNA RECOGNITION MOTIF-CONTAINING 145 823 - -
Eupl02g01052 842 MobiDBLite consensus disorder prediction 496 546 - -
Eupl02g01052 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 242 IPR000504 GO:0003723
Eupl02g01052 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 328 IPR000504 GO:0003723
Eupl02g01052 842 SUPERFAMILY RNA-binding domain, RBD 173 336 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01052 Eupl-Chr2 16077409 16086713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01052 173 327 Eukaryotic Initiation Factors Gene Family AT1G71770 26.220 3.78e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01052 - - nnu:104590542 1399.42