Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01040 ATGAAAGAGACAAGTGAAGATGGAGATGGTTTGAAGAGCAAAAAAGGAGAATTGGGTCATGGAGGAGATGATCAGAAGATTTCATTCTACAAGCTTTTCACATTTGCAGACCGACTTGATGTCGTGTTGATGATTGTTGGGACGATGGCTGCCATTGGAAATGGTCTCACCATGCCGCTTATGACGCTAATATTTGGCCAGCTTATCAATTCCTTTGGTGGTTCAGACAATTCAAATGTTGTTCATGAAGTATCCAAGGTTTCCTTAAAGTTCGTGTACTTGGCTATTGGAGCGGGAGCTGCGTCGTTCTTACAGGTGTGTAGCTGGATGGTAACAGGAGAGAGACAGGCAGCCCGTATTCGGGGTTTGTACCTAAAAACCATACTAAGACAAGACATCACGTTCTTCGACACGGAAACAACAACCGGAGAAGTCATCGGGAGGATGTCTGGGGATACCATTCTCATTCAAGATGCCATGGGTGAAAAGGTGGGGAAGTTCATACAACTCATTTCGACTTTTATTGGCGGTTTTGCAATTGCATTTGCAAAAGGATGGCTTCTCGCGCTGGTAATGATGTCGTGCATTCCTCCCCTTGTCATTGCTGGCAGCGTCATGTCGATATTCATTTCAAAAATGTCTAGCCGTGGACAAATTGCATATGCTGAAGCTGGAAATATTGTAGAACAAACAGTCGGAGCTATTCGAACTGTTGCATCCTTTACCGGAGAAATGTTCGCCATAGAAAAATATAACAGATCACTACGAACTGCATGTACCTTCACCATTCAACAAGGGTTCGCGTCTGGCTTAGGTCTCGGTGTAGTTTTAGCAGTCATATTCAGCAGTTACGGACTAGCTGTGTGGTACGGTGCCAAGCTGATCATCGAGAAAGGATACAACGGTGGACAAGTCATCAATGTCATGATGTCAGTCATGACTGGTGGAATGTCCCTAGGTCAGGCATCCCCAAGCTTGAATGCATTTGCAGCTGGGCAAGCTGCAGCATACAAGATGTTTGAGACAATCAAACGAAAACCACTGATAGACGCCTACGACATGAGTGGGGCAGTATTAGAAGACATTAAGGGTGACATCGAATTGAAAGATGTGTACTTCAGCTACCCGGCAAGGCCTGATGTTCAGATATTTTCTGGCTTCTCACTGCGTGTTCCAAGTGGCACAACGGCAGCATTAGTTGGACAAAGTGGAAGTGGGAAGTCGACGGTGATCAGTCTTGTGGAGAGATTCTATGATCCCCATGCTGGTGAAATTCTTATAGATGGTATCAACTTGAAGAAGTTGCAGCTCAAATGGATAAGGGAGAAGATTGGGCTCGTTAGCCAGGAACCGATATTGTTTGCAACTACTATAAAAGAGAACATCGCATATGGGAAGGAAAATGCAACATATGAAGAAATTAGGACAGCAATTGAGCTTGCTAATGCTGCAAAGTTCATTGACAAGTTGCCCAAGGGGCTTGACACAATGGTAGGTGAGCATGGAACCCAACTGTCTGGTGGACAGAAGCAAAGGATTGCAATTGCAAGGGCCATCTTAAAAAACCCAAAGATCCTACTTCTTGATGAAGCAACAAGCGCATTGGACGCTGAGTCTGAACGCATAGTTCAAGATGCACTAGTAAGAATCATGTCATATCGTACGACTCTGGTCGTCGCACATCGTTTGACCACAATTAGGAACGCCGATAACATAGCAGTGGTGCATCAGGGGAAGATTGTGGAACAAGGAACTCACAACGAGTTGACCAAGGATCCTAATGGGGCTTACTCTCAACTCATTCGTCTGCAAGAGGGGGCTAAACAAGCTGAAGATGTGCTACCATCGGACCCAGATGATGTAGATTTGAGCTTGGATGCTGATACGGCAATGCGCAGGTCTGGGAGCCAGAGGCTATCTGTAAAGAGATCCATAAGCAGAGGTTCGTCGGGAAGGCGTTCCTTTTCACTTACCTTTGGTGTCCCTGGTCCCATAGGCCTTCATGAGACTGAAATTGGAGGAGAGGACAGTATTGAAAGAGGTGAACAGGATGAGGAGGAGCGCCGCAAGGTCTCCATTACACGGCTGGCATACATGAATAAGCCAGAGGTGCCAGTTCTGTTGCTAGGATCCATTGCTGCAGCCATACATGGTGTAATCTTCCCTATCTTTGGACTCTTGCTATCGAGTGCAATCAAAACCTTCTTTGAGCCACCACGTGAGCTTCGAAAAGATGCTAGGTTTTGGAGCCTGATGTATACGGGTCTAGGTTGCATTGCTTTAGTTTGTGTACCGTTGCAGCAATACTTCTTTGGAGTTGCAGGTGGCAAACTGATCCAACGCATCCGATCCATGTGTTTTGAGAGGGTGGTGCACCAGGAAATCAGCTGGTTCGATGACCCTACAAATTCAAGTGGGGCAATTGGTGCAAGGTTATCTGCTGACGCTTCGAACGTGCGAAGTCTAGTAGGTGATGCCTTGGCCCTAGTGGTTCAGAACATATCAACGATGATAGCAGGACTTGTCATAGCATTCACAGCAAATTGGATATTGGCTCTTATAGTTCTGGCTTTGCTACCCTTGGTGGGTTTGCAAGGATATGCTCAGATGAAGTTTCTAAAGGGTTTCAGTGCAGATGCAAAGGTGATGTATGAAGAAGCGAGTCAAGTTGCAAATGATGCTGTAGGTAGCATCCGAACGGTTGCATCCTTCTGTGCAGAACAAAAGGTGATGGATCTTTACCAGAAGAAATGTGAAGCTCCCATGAAACACGGAGTCCGACTAGGAGTCGTAAGTGGTGCAGGCTTTGGCTTCTCCTTCGTTGCACTATATTGCACTAATGCCCTCTGTTTTTATATCGGAGCTCTTCTTATTCAAGATGGGAAAGCAACTTTCGGACAGGTTTTCAAGGTTTTCTTTGCTTTGACAATTTCAGCAGTTGGGATTTCACAAACCAGTGCACTGGCACCAGACACTAACAAAGCTAAGGATTCCACTGCTTCCATTTTTAAACTTCTTGACAGCAAACCCAAGATTGATTCAAGCAACAATGAAGGTACAACATTAGCCAGTGTGAGGGGTGACATTGAGTTCCAACATGTCAGCTTCAAATACCCAACACGCCCAGATGTGCAAATCTTCAAAGACTTGTGCTTGAGCATCCCCTCTGGAAAGACTGTTGCTCTTGTCGGAGAGAGTGGGAGTGGGAAATCAACAGTCATCAGCCTTCTAGAGAGGTTCTATGATCCCAATTCAGGCCATATACTGCTGGATGGAGTGGAGATTCAAAAGTTCAAGCTAAGTTGGTTGAGGCAACAGATGGGCTTGGTAAGCCAAGAGCCTATACTGTTCAATGAAACAATTCGTGCCAACATAGCTTACGGGAAGCAAGGAGGTGCATCTGAAGATGAGATCATTGCAGCAACAAAAGCAGCAAATGCACATAGTTTCATATCAGGGCTCCCGCAAGGCTACGATACCTCTGTAGGGGAGAGAGGGGTACAGTTATCAGGTGGGCAGAAGCAACGGATTGCTATTGCAAGGGCAATATTGAAGAACCCGAAGATCCTTCTGCTTGATGAGGCAACGAGTGCACTAGATGCAGAATCAGAGCGTGTAGTACAAGACGCATTAGATAGGGTGATGAAGAACAGGACAACTGTTGTTGTTGCTCACCGCCTATCCACAATCAAAGGGGCTGATATCATTTCAGTGGTGAAGGATGGCATGATTGCTGAAAAAGGAAGACATGAGGCGTTGATGAAAATAAGGGATGGGGCTTACGCATCTCTTGTAGCACTTCACATGAGTTCCTCCACATAA 3822 0.4579 MKETSEDGDGLKSKKGELGHGGDDQKISFYKLFTFADRLDVVLMIVGTMAAIGNGLTMPLMTLIFGQLINSFGGSDNSNVVHEVSKVSLKFVYLAIGAGAASFLQVCSWMVTGERQAARIRGLYLKTILRQDITFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLISTFIGGFAIAFAKGWLLALVMMSCIPPLVIAGSVMSIFISKMSSRGQIAYAEAGNIVEQTVGAIRTVASFTGEMFAIEKYNRSLRTACTFTIQQGFASGLGLGVVLAVIFSSYGLAVWYGAKLIIEKGYNGGQVINVMMSVMTGGMSLGQASPSLNAFAAGQAAAYKMFETIKRKPLIDAYDMSGAVLEDIKGDIELKDVYFSYPARPDVQIFSGFSLRVPSGTTAALVGQSGSGKSTVISLVERFYDPHAGEILIDGINLKKLQLKWIREKIGLVSQEPILFATTIKENIAYGKENATYEEIRTAIELANAAKFIDKLPKGLDTMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVRIMSYRTTLVVAHRLTTIRNADNIAVVHQGKIVEQGTHNELTKDPNGAYSQLIRLQEGAKQAEDVLPSDPDDVDLSLDADTAMRRSGSQRLSVKRSISRGSSGRRSFSLTFGVPGPIGLHETEIGGEDSIERGEQDEEERRKVSITRLAYMNKPEVPVLLLGSIAAAIHGVIFPIFGLLLSSAIKTFFEPPRELRKDARFWSLMYTGLGCIALVCVPLQQYFFGVAGGKLIQRIRSMCFERVVHQEISWFDDPTNSSGAIGARLSADASNVRSLVGDALALVVQNISTMIAGLVIAFTANWILALIVLALLPLVGLQGYAQMKFLKGFSADAKVMYEEASQVANDAVGSIRTVASFCAEQKVMDLYQKKCEAPMKHGVRLGVVSGAGFGFSFVALYCTNALCFYIGALLIQDGKATFGQVFKVFFALTISAVGISQTSALAPDTNKAKDSTASIFKLLDSKPKIDSSNNEGTTLASVRGDIEFQHVSFKYPTRPDVQIFKDLCLSIPSGKTVALVGESGSGKSTVISLLERFYDPNSGHILLDGVEIQKFKLSWLRQQMGLVSQEPILFNETIRANIAYGKQGGASEDEIIAATKAANAHSFISGLPQGYDTSVGERGVQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKGADIISVVKDGMIAEKGRHEALMKIRDGAYASLVALHMSSST* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01040 1273 Gene3D ABC transporter type 1, transmembrane domain 89 1003 IPR036640 GO:0005524|GO:0016020
Eupl02g01040 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1029 1266 IPR003439 GO:0005524
Eupl02g01040 1273 FunFam ABC transporter B family member 9 31 362 - -
Eupl02g01040 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 602 IPR003439 GO:0005524
Eupl02g01040 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1267 IPR027417 -
Eupl02g01040 1273 SMART AAA_5 393 579 IPR003593 GO:0016887
Eupl02g01040 1273 SMART AAA_5 1056 1249 IPR003593 GO:0016887
Eupl02g01040 1273 CDD ABC_MTABC3_MDL1_MDL2 366 604 - -
Eupl02g01040 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 697 1012 - -
Eupl02g01040 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 708 994 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl02g01040 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 604 IPR027417 -
Eupl02g01040 1273 Pfam ABC transporter transmembrane region 44 316 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl02g01040 1273 Pfam ABC transporter transmembrane region 708 979 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl02g01040 1273 ProSitePatterns ABC transporters family signature. 1169 1183 IPR017871 GO:0005524|GO:0016887
Eupl02g01040 1273 PANTHER ABC TRANSPORTER B FAMILY 6 605 IPR039421 -
Eupl02g01040 1273 FunFam Os01g0533900 protein 688 995 - -
Eupl02g01040 1273 SUPERFAMILY ABC transporter transmembrane region 695 1010 IPR036640 GO:0005524|GO:0016020
Eupl02g01040 1273 FunFam ABC transporter B family member 1 356 605 - -
Eupl02g01040 1273 Pfam ABC transporter 1048 1197 IPR003439 GO:0005524
Eupl02g01040 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 44 327 - -
Eupl02g01040 1273 Gene3D - 1020 1272 IPR027417 -
Eupl02g01040 1273 FunFam ABC transporter B family member 1 1019 1269 - -
Eupl02g01040 1273 Pfam ABC transporter 386 533 IPR003439 GO:0005524
Eupl02g01040 1273 MobiDBLite consensus disorder prediction 667 686 - -
Eupl02g01040 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 45 331 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl02g01040 1273 SUPERFAMILY ABC transporter transmembrane region 31 350 IPR036640 GO:0005524|GO:0016020
Eupl02g01040 1273 MobiDBLite consensus disorder prediction 672 686 - -
Eupl02g01040 1273 CDD ABC_MTABC3_MDL1_MDL2 1029 1265 - -
Eupl02g01040 1273 ProSitePatterns ABC transporters family signature. 505 519 IPR017871 GO:0005524|GO:0016887
Eupl02g01040 1273 Gene3D - 364 638 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01040 Eupl-Chr2 15853262 15861713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01040 27 1273 Calmodulin-binding Proteins AT2G36910 45.107 0.0 1069
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01040 K05658 - nnu:104608957 2050.79