Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01019 ATGGGGATTCAAGGTCTTCTTCCTCTGTTGAAGTCTATAATGGTCCCCATCCACATAAAGGACCTACGTGGCTGTTGCGTTGCCGTCGATACCTATTCTTGGCTCCACAAGGGGGCCTTATCGTGCAGCAAGGAGCTTTGCAAGGGCGAGCCCAGTTCCAGGCATATTGACTACTGCATGCATAGAGTAAATTTGCTCCGGCATCATGGTGTCAAACCTATTCTTGTCTTTGATGGTGGGCTTCTACCAATGAAGAGTGAACAAGAGACCAAGCGTTCAAGGGCAAGGAAAGAAAATCTTGAGCGTGCTATTGAGCACGAGTCAACTGGCAATTCTACAGCCGCTTACGAGTGCTACCAAAAGGCGGTTGATATCTCACCTTCAGTTGCATATGAACTCATCCAGGTTTTAAAGCAGGAGAATGTTGATTATGTTGTGGCTCCTTATGAGGCTGATGCTCAAATGACGTTCTTGGCCCTCAGCAAGCATGTTGATGCAGTTATTACTGAGGATTCAGACTTGATTCCATTTGGATGTCCCAGAATTGTCTTCAAAATGGACAAATTTGGGCAAGGTGTTCAGTTTCAGTATTCCATGCTACAACAGAATAAGGAGCTGAATTTTAATGGATTTACCAAGCAGATGCTTCTTGAGATGTGCATCTTAAGTGGTTGTGACTATCTGCCGTCGTTGCCAGGAATGGGTCTGAAAAGGGCTCATGCACTAATTCAGAAGTTCAAAAGCTATGAAAAGGTGATTAAGCACTTGAGGTACAATACCGTTGCAGTTCCTCCTCTTTATGAAGAATCATTCAAGAAAGCATTGTGGACCTTTCGGCATCAACGAGTTTATGATCCTATGGTTGAAGATATTGTGCATTTATCAGGCATTCCCCATGACCTTGGCCATGATTTGGACTTTTTAGGCCCATCGATACCACAAGATTTAGCTAAAGGCATCGCTAGAGGTGATTTCGATCCAATCACTAAAAAGCCATTCCAGGGGGAGACTGTTTGTACTGGGCTTGTGCTTGATAGAACTTATCCACTCAAAGATTTTAAAACTGAAAGGGAAAGGAAAAAGCTAGATCTGCCTGCACAGAAAAATGTTCTAACTAACTACTTCTGCTCTGCATCTATCGAAGCAAAGAAGAAATTTAAGGCTCCTCGAATCATACCTAAGTATTTAGATTCAATGGAAGAATCTTCTCCTAACTTTGAAGGACACATATCTGAAGAGCCTACCACTTTTACTATAAACTGTTCACAAGGGTCGCTAATAGATTCGGGAAATTTAACTGATGCCTCTCCTCCCAAAGATTCTATGGAAGATGGCTTTGCCACTGATGGTTCTCAGTCTTTGGAGTCTCCTTGTTATGTGGGATTAAGTGCGACGGGAAATTTGAGAGGTTCAAAACATGCTGTATCATTGCAACAATCAAGGCATGTAGTGTATAAGCCTTGTCTAACATTGCATAAGGAGCGTGAAAGTAAGTTCGTGTTGGATGGAGTTGAGGGAAAAACGAGATTAGTGAACAAAAAGATCATTGTGAGGAGTTCTTATTTTCAACATAAGTTATTAAATGAGAATGATCTTGAAAATAAAAATGAAAAACTCATTTCTGAGAATGATGCTGCCAATGGTGTTCTTTGTGACTATACTGTACCTGAAAGTGCCTCATTCGGGAATAATTACCTTAAAAGTGCAATTACGAAGAGGAAGTCCATCCCCATTGAAAGAATTCATACTGAAACTGTGAAAGTGAAGCATGCACGGACAAAAGCATCTCTTTCTAGTAAAAGCAATTGCATTCCTGATTTTGACAGTAAATCAATGGAGAGAGGCAATGAAGAAGAAAATTTTGGATGCAAAATTTCCCATTTAAGCAATTATTCTGATATAGCAGAGAAATCAATGGAAAGATTTGTTTCAGTAATGTCTTCATTCAGATGCACCTCATCTGGTTCTCGTGCTAGTGGCCTTCGTGCCCCTCTGAAAGATGTTCAGAACACATTTGGGATTAGGTCAACCATTGTGCCGATGGATTTAAGCAAATTTTCTTATGTACCTAACAACCAGAAGACTGCTTCAGCATCTCGCAGAGACTAA 2109 0.4106 MGIQGLLPLLKSIMVPIHIKDLRGCCVAVDTYSWLHKGALSCSKELCKGEPSSRHIDYCMHRVNLLRHHGVKPILVFDGGLLPMKSEQETKRSRARKENLERAIEHESTGNSTAAYECYQKAVDISPSVAYELIQVLKQENVDYVVAPYEADAQMTFLALSKHVDAVITEDSDLIPFGCPRIVFKMDKFGQGVQFQYSMLQQNKELNFNGFTKQMLLEMCILSGCDYLPSLPGMGLKRAHALIQKFKSYEKVIKHLRYNTVAVPPLYEESFKKALWTFRHQRVYDPMVEDIVHLSGIPHDLGHDLDFLGPSIPQDLAKGIARGDFDPITKKPFQGETVCTGLVLDRTYPLKDFKTERERKKLDLPAQKNVLTNYFCSASIEAKKKFKAPRIIPKYLDSMEESSPNFEGHISEEPTTFTINCSQGSLIDSGNLTDASPPKDSMEDGFATDGSQSLESPCYVGLSATGNLRGSKHAVSLQQSRHVVYKPCLTLHKERESKFVLDGVEGKTRLVNKKIIVRSSYFQHKLLNENDLENKNEKLISENDAANGVLCDYTVPESASFGNNYLKSAITKRKSIPIERIHTETVKVKHARTKASLSSKSNCIPDFDSKSMERGNEEENFGCKISHLSNYSDIAEKSMERFVSVMSSFRCTSSGSRASGLRAPLKDVQNTFGIRSTIVPMDLSKFSYVPNNQKTASASRRD* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01019 702 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Eupl02g01019 702 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Eupl02g01019 702 SMART xpgn3 1 99 IPR006085 GO:0004518
Eupl02g01019 702 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Eupl02g01019 702 Gene3D - 1 207 - -
Eupl02g01019 702 CDD PIN_EXO1 1 198 IPR044752 GO:0046872
Eupl02g01019 702 Coils Coil 529 549 - -
Eupl02g01019 702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Eupl02g01019 702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Eupl02g01019 702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Eupl02g01019 702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Eupl02g01019 702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Eupl02g01019 702 FunFam Exonuclease 1, putative 1 207 - -
Eupl02g01019 702 Gene3D - 209 281 - -
Eupl02g01019 702 SMART xpgineu 138 208 IPR006086 GO:0004518
Eupl02g01019 702 ProSitePatterns XPG protein signature 2. 141 155 IPR019974 GO:0016788
Eupl02g01019 702 FunFam exonuclease 1 209 281 - -
Eupl02g01019 702 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Eupl02g01019 702 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Eupl02g01019 702 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 404 IPR006084 -
Eupl02g01019 702 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Eupl02g01019 702 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01019 Eupl-Chr2 15122447 15148988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01019 1 264 Core DNA Replication Machinery Family AT5G26680 28.826 1.53e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01019 K10746 - nnu:104608973 1005.74