Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01007 ATGGGTAGAGGAAAGATCGAAATCAAGCGGATCGAAAACACGACTAATCGTCAGGTCACCTTCTGTAAGCGCCGCAACGGCTTACTCAAGAAGGCCTATGAGTTATCTGTACTTTGTGATGCCGAGGTAGCTCTCATTGTCTTCTCCAGCCGTGGTCGCCTTTACGAGTACTCGAACAACAGTGTGAAAACAACAATTGAGAGGTACAAGAAGGCCTGCGCAAATTCCTCCAATTCTATAACTGTTTCAGAAGCCAATGCTCAGTTCTACCAGCAAGAAGCCACCAAACTCCGCCAACAGATAGTGACTTTACAAAACGCAAACAGAAATTTGATGGGTGATGCTCTTAGTTCTATGACTGGTAAGGAGCTCAAGCAACTAGAAACTAGATTGGAGAAGGGCATCAGCAGAATCCGATCCAAAAAGAATGAACTCTTGTTTGCTGAGATCGAGTATATGCAGAAGAGGGAGATTGACTTGCAGAACGATAACATGTATCTCCGAGCAAAGATAACTGAGAATGAGAGAGCCCAACAGCAGATGAACATGTTGCCAGCGAATGAGTACGAGGTTATGTCTTTGGCACCATTTGACTCTCGTAACTTCCTCCAAGTAAATCTATCGGAACACAACAACCAATACTCTCGCCCAGAGCAAACAGCCCTCCAACTTGGTTGA 678 0.4499 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKTTIERYKKACANSSNSITVSEANAQFYQQEATKLRQQIVTLQNANRNLMGDALSSMTGKELKQLETRLEKGISRIRSKKNELLFAEIEYMQKREIDLQNDNMYLRAKITENERAQQQMNMLPANEYEVMSLAPFDSRNFLQVNLSEHNNQYSRPEQTALQLG* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01007 225 Coils Coil 80 114 - -
Eupl02g01007 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl02g01007 225 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl02g01007 225 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Eupl02g01007 225 Coils Coil 124 144 - -
Eupl02g01007 225 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Eupl02g01007 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl02g01007 225 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl02g01007 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl02g01007 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl02g01007 225 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Eupl02g01007 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl02g01007 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl02g01007 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl02g01007 225 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Eupl02g01007 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01007 Eupl-Chr2 14832987 14854168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01007 1 224 MADS-box Gene Family AT3G58780 64.224 2.60e-103 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl02g01007 K-box 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01007 K09264 - nnu:104608988 371.318