Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01001 ATGAAGATCCAGTGTAATGCGTGTGAGGCAGCGGAGGCACACGTCCTTTGCTGCGCAGACGAAGCGGCACTGTGTTGGGCCTGTGATGAGAAGGTTCATGCGGCAAACAAGCTTGCGAGCAAGCACCAGAGGATTCCGCTTTCCAATTCATCATCGCAGATGCCTTATTGTGATATCTGTCAGGAGACTGTTGGCTATTTTTTCTGTTTGGAGGATCGAGCTTTGCTATGTAGGAAATGTGATGTTGCCATACACACAGCAAATGCTTTTGTATCTGCCCATCAGAGGTTTCTGCTTACCGGGGTGAAAGTGGGGCTTGAGCCTACTGAACAAGTTGGGTCTTCTATTAAGGAGAAGTCCAATTCTGTGGAAAGAACTGCAGAAGCAGCATCTCAATCAGTGCCTAGAAGGGGTACTTCAACATCATTGGCTCGTGAAACTAATGGAGTGTTATCCAGCCAAGTTGGTGGAGTTGGAGGTCTATCGAAGACAACTAAGGTGTCATTTTCTGGGGGTACTACGACTGGAAGTATTCCCGAGTGGCCTTTAGATGAGTTTGTTGGACTAACAGATTTCAATCAGGATTATGGTTTCATTGAGCTTGGATCTTCCAAGGTTGATAGCAGGAAGCTTGGAGATTCCGAATGGTCTCCAATTTTACGAGCTGCCAATGAAGATTTTGATGTTGAAGAGTGCTTGGGTATGGTGCCAGAGATTGCAGCCCCACCCACAACCTCCGGTCTCTACTGGCCGAAAAACATCCGAAATTCCCCATCTGACAGTGCAGTGTTTGTTCCTGATGTGTATTGCCCTTCTCTGCAAAACGCCCATGCATATCAACGGAATGCCACTGCCACCATCTCGAAACGCAGAAGGCAGTGTTAG 885 0.4757 MKIQCNACEAAEAHVLCCADEAALCWACDEKVHAANKLASKHQRIPLSNSSSQMPYCDICQETVGYFFCLEDRALLCRKCDVAIHTANAFVSAHQRFLLTGVKVGLEPTEQVGSSIKEKSNSVERTAEAASQSVPRRGTSTSLARETNGVLSSQVGGVGGLSKTTKVSFSGGTTTGSIPEWPLDEFVGLTDFNQDYGFIELGSSKVDSRKLGDSEWSPILRAANEDFDVEECLGMVPEIAAPPTTSGLYWPKNIRNSPSDSAVFVPDVYCPSLQNAHAYQRNATATISKRRRQC* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01001 294 MobiDBLite consensus disorder prediction 111 143 - -
Eupl02g01001 294 CDD Bbox1_BBX-like 57 99 - -
Eupl02g01001 294 Gene3D Classic Zinc Finger 1 93 - -
Eupl02g01001 294 CDD Bbox1_BBX-like 5 47 - -
Eupl02g01001 294 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Eupl02g01001 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 268 - -
Eupl02g01001 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Eupl02g01001 294 MobiDBLite consensus disorder prediction 113 143 - -
Eupl02g01001 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Eupl02g01001 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Eupl02g01001 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Eupl02g01001 294 FunFam B-box zinc finger protein 22 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01001 Eupl-Chr2 14645079 14650710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01001 1 293 C2C2-CO-like Transcription Factor Family AT1G78600 48.318 7.34e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl02g01001 zf-B_box 9.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01001 - - ming:122059976 397.897