Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00943 ATGAGAAGGAGAGGATCGCCTTCGTTAGAGGCCTTCTTGGCTCCAGTTCATCTAAGCGAGATCGGGCTTGTGCAGACCCTCGCTGTCGTGTCCGCCGAATTGATCTCGTCGTTTTCAGATCACTCGTTCCCTTTGCAGCGTAGGAACTCCAGATCTCTGATTCGGAAGATCGAGATCTTTGTTGTACTTTTCGAATTTATCAGAGACTCTGATATCAGTATTCCTTCCACCGCCATTCTCTGCTTTAAGGAGCTTTACCTCCTCATGTACCGATCTAAGATCCTTCTTGATTACTGTTCGCAGTCCAGCCGGCTATGGCTCCTCCTTCAAAATACTTCGATTTCGGTCCATTTCCATGACCTCAACCAGGAGATCTCAACGCCTCTCGATGTTTTCCCTTTGAAAGAGCTCGATCTAACGCAGGATGTCAGAGAGCAGATTGAGCTTCTGCAGAAGCAATCGAGAAGAGCCAAATTGTTCATTGATGAGAGCGACGAGTTGGTTAGACAACGGCTCTTCTCATTCCTTGATGAATTTGAGCAGGGACGGGTTCCGGATCCGGTGGAGCTGCGGGCAGTTTTTATGGACAAACTGGGAATTCGAGACGCAAAAACTTGTAGATCTGAGATTGAGTTTCTCGAAGAACATATTTATAATCAGAAGGAGGATGTTGAACCAACGGTCTCGGTACTCAATGGATTTGTTGCTCTCACTAGGTACTGCAGATTCTTGCTTTTCGGATTTGAGGAAGAAGAAGAAGGTTATGGGAATCCCAAGAAACAAAGAAGTGGTCTAGTTACTCAAGAGATTGGGGAAACCTTCCTTACAATTCCGAAGGACTTTTGTTGCCCAATCTCTTTGGATTTGATGCAAGATCCAGTGATTATCTCAACTGGGCAGACCTACGATCGAGCTTCGATATCCCGCAGGATGGAAGAAGGGCATTGCAGCTGCCCAAAGACGGGGCAGATGCTCACCCACATCCGTCTTGTTCCGAATCGAGCTCTCCGAAGTCTAATTTCCCAATGGTGCACTGCTCATGGGATCCCCTTTGGGCCACCAGAGGGCACCGATACGTCAGCGGAAACTGTTGCTATGGCTACATCCACGAAGGCTACGTATGAAGCCAACAAGGCCACAGCTGAGCTTCTCGTTCAGCAGCTATCAAATGGGTCAAAGGGAGCAAAAACTCTTGCTGCTCGTGAGCTTCGGTTTCTAGCAAAAACTGGAAAGGAGAACCGTGCTTGCATTGCAGAATCTGGGGCAATCCCCCTTCTTCAGAAGCTACTTTCATCACCAAATCCAGTTGCGCAAGAAAATTCAGTAACTGCCATTCTCAATTTATCGATCCATGACAAGAACAAGAGCCGAATTATGGAGGAAGCAGGTTGTCTTAGATCGATTGTTGAGGTTCTTAGATTCGGCATCACAACTGAGGCAAGGGAAAATGCTGCAGCGACACTTTTCAGCCTCTCCGCAGTTCATGATTACAAGAAGAGTATCACGGATGAGGAAGGGGCGGTTGAGGCCCTGGCAGGGATGTTAAGAGAGGGGAGCCCGAGAGGAAAGAAGGATGCTGTAACAGCACTATTTAATCTGTCTACCCACGCGGATAATTGCAAGAGAATGATTGAGGCAGGGGCTATAACGGCCTTGGTGGGGGCATTGGGAACTGAAGGGATGGCAGAGGAGGCGGCGGGAGCATTGGCGTTGCTTGTTAGGCAGCCAATCGGGGCCGAAGCTGTAGGAAAGGAGGAAATGGCAGTAGCAGGATTGATTGGGATGATGCGGCAGGGGACCCCAAGGGGGATGGAGAACGCTGTCACAGCTTTGCTCGAGTTGTGTCGGAGTGGTGGGGCAGCTGCGACTGAGAGAGGGGAGCCCGAGAGGAAAGAAGAATGCTGTAACAGCACTATTTAA 1920 0.4911 MRRRGSPSLEAFLAPVHLSEIGLVQTLAVVSAELISSFSDHSFPLQRRNSRSLIRKIEIFVVLFEFIRDSDISIPSTAILCFKELYLLMYRSKILLDYCSQSSRLWLLLQNTSISVHFHDLNQEISTPLDVFPLKELDLTQDVREQIELLQKQSRRAKLFIDESDELVRQRLFSFLDEFEQGRVPDPVELRAVFMDKLGIRDAKTCRSEIEFLEEHIYNQKEDVEPTVSVLNGFVALTRYCRFLLFGFEEEEEGYGNPKKQRSGLVTQEIGETFLTIPKDFCCPISLDLMQDPVIISTGQTYDRASISRRMEEGHCSCPKTGQMLTHIRLVPNRALRSLISQWCTAHGIPFGPPEGTDTSAETVAMATSTKATYEANKATAELLVQQLSNGSKGAKTLAARELRFLAKTGKENRACIAESGAIPLLQKLLSSPNPVAQENSVTAILNLSIHDKNKSRIMEEAGCLRSIVEVLRFGITTEARENAAATLFSLSAVHDYKKSITDEEGAVEALAGMLREGSPRGKKDAVTALFNLSTHADNCKRMIEAGAITALVGALGTEGMAEEAAGALALLVRQPIGAEAVGKEEMAVAGLIGMMRQGTPRGMENAVTALLELCRSGGAAATERGEPERKEECCNSTI* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00943 639 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 506 548 IPR000225 GO:0005515
Eupl02g00943 639 Gene3D - 357 635 IPR011989 -
Eupl02g00943 639 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Eupl02g00943 639 FunFam RING-type E3 ubiquitin transferase 276 351 - -
Eupl02g00943 639 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Eupl02g00943 639 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Eupl02g00943 639 Pfam Armadillo/beta-catenin-like repeat 411 449 IPR000225 GO:0005515
Eupl02g00943 639 PANTHER U BOX DOMAIN-CONTAINING 50 621 - -
Eupl02g00943 639 FunFam RING-type E3 ubiquitin transferase 477 628 - -
Eupl02g00943 639 CDD RING-Ubox_PUB 278 330 IPR045210 -
Eupl02g00943 639 SUPERFAMILY RING/U-box 265 350 - -
Eupl02g00943 639 SUPERFAMILY ARM repeat 382 620 IPR016024 -
Eupl02g00943 639 Pfam U-box domain 277 347 IPR003613 GO:0004842|GO:0016567
Eupl02g00943 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 349 IPR013083 -
Eupl02g00943 639 SMART arm_5 495 535 IPR000225 GO:0005515
Eupl02g00943 639 SMART arm_5 451 493 IPR000225 GO:0005515
Eupl02g00943 639 SMART arm_5 410 450 IPR000225 GO:0005515
Eupl02g00943 639 SMART arm_5 536 574 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00943 Eupl-Chr2 12910137 12912056 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00943 10 625 U-box Gene Family AT1G29340 66.614 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00943 - - nnu:104586555 954.896