Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00942 ATGACCAGAGCTGTTCATAGTAGATTTTTCAAAGATGAGAATGGTCCTATTAGTGATCATCTTCGCAACCATGTTCATTTGACAAATTGCATTCACTTGAAGAACCATATGCACAGGCACAGCCCGATTTTGGCTGAAAGGTCACTTATGAGGGGCCTTATTGTCCTTCAGAGGTCGAGGTCACTCAGAGATCCTTCGACTAGTCCTCCCTCATGGCATTCTCCTTCCATCTTAGAATCGTTTTCTAAGAAACTCGAAAAGGAAGCAGCAGTGCGTGAAGGAAGAAGGTCTGTTGGGATTGAGCGTCGGAGGGAAGGTAGAAGGTTGTCAGGAAGCTCACCAACTGTTGCAAGTGTAGCAACATCAAAATTTGCTGCTGCTGAAGTAAGCAGGGGAAATGATGGGGGATCGTTTATTAGTGATCGTAGGGATGCCAGAGGAATTAAAGGAGAAGAATCCAGTCGAAGAAGTCGCAGGAGTGATCATTCTGGTGGCACAGAGGAGCCTCTACAAGATGGTCACAATTTGGTAATGGTCAATCATTTGGTTTCAGGGAAGGCAGAGCCAAGAGACAAAAAGATTTCACAGAAGGGGAAGCAAATTCAACATGGTCACCTTACGACCCTTTCAGAACATTTGAAGGAATGTCCAATGGATAGTGATGATGTACAGAATTCTCACCTCCATCGTCATGGAAGACGTTCACGAGAGGAGAAAACCAGTGAGGAACCAGAAGCAAGCATTAGCGGCTATTGCAATGGATTGAACAGGGTGAAAAAGCGAAAGTTTCGAGGTACGAGAAGAGCTCGGGCTGCTATGGGCTCAAGAGATTTTGGAGTTCTCAATGAATTGTCTGTGGCTTCTAATTCATTAGTCCAAGGTTCAACACAACGTAAGTATTATATGGAGGATGGAGAGGAAGAAGATGCCAAGCTAGGTGTTACACGGGCTCCCAGAAATGGGTGTGGGATTCCTTTTAATTGGTCAAGAATTCACCATGGAGGTAAAACATTTCTGGACATGGCAGGAAGGAGTTTATCTTGTGGGCTCTCTGACTCGAGGTTAAGAAAAGATGGCTCTATTCGCCAAGGTAAGGATGGCTCAGATATGCCCATGGCATCTGATCACTCAAGCTCGTCTACTAAATCTGATGCAGAAGCGACACCTCTGTTAGTTGAGCCATCGGGATCCCAGGGAAGCACCGATAATGCTGCTTGGGTGCATGAATATTCGGGGGAGCTAGGCATTTTTGCTGATCACAGTTTGAAGCATGACGTGGACTCCGACCTTGCTTCTGAAGCGAGATCGGGTGGTCAACTCAAATTTAGAGGAGACCGCCATGGTAGACACCAAAGTCTGACACAGAAATACATGCCACGAACGTTCAAGGATCTGGTAGGACAAAACTTGGTGGCACAAGCTCTTTTAAATGCTGTATTGAAAAGAAAAATTGGGTTTCTGTATGTGTTCTATGGTCCTCATGGCACTGGGAAAACTTCTTGTGCTCGCATATTTGCCAGAGCTTTAAATTGCCAATCTTCAGAGCATCCCAAACCTTGTGGGGTTTGCAATTCCTGCATTGCACATGATCTGGGTAAGAGTCGAAATGTGAGGGAAGTTGGTCCTGTCAGTAATTTTGTCTTCGAGAGTATTATGGATCTACTTGACAGTATGATTATATCCCAGATGCAATCTCAATATCGAGTGTTCATTTTTGATGATTGCGATACTTTGTCCCCTGATTCTTGGAGTGCTATCTCGAAGGTCCTTGATCGAGCACCGAGACGTGTGGTTTTTGTCCTTATCAGTACAAGTCTTGATCATTTGCCTCATATAATCATTTCCAGGTGCCAGAAATTCTTTTTCCCAAAGTTGAAGGATGCAGATATTATCTATACTTTGCAGTGGATCGCGACTAAAGAGGATCTCGAAATTGATAAGGATGCACTAAAACTTATTGCTTCACGTTCAGATGGATCTTTGAGGGATGCTGAGATGACTCTTGAGCAACTGAGTTTGCTTGGACAGAGAATCTCTGTTCCTCTAGTACAGGAGCTTGTTGGGTTGATCTCTGATGAGAAATTGGTAGATCTACTTGATTTGGCATTATCTGCAGATACGGTGAACACTGTGAAAAATTTAAGAGAGATTATGGAAGCTGGTGTGGAGCCATTAGCACTGATGTCACAGCTTGCTACAATAATAACTGATGTTCTTGCTGGTAGCTATGTCTTCACCAAGGAAAGGCTAAGGCGGAAGTTCTTCCGCCAACCAACATTATCAAAGGAAGATATGGAGAAATTGCGTCAAGCTATGAAAACACCGTCTGAAGCTGAAAAACAATTGAGAATGTCAAATGACAAATTGACATGGCTAACAGCTGCATTGCTTCAACTTGCACCCGATCAGCAGTATTTGTTGCCTAGTTCTTCTGCCGACACTAGTTTTAATCATAGTCCCTTGGTCCTAAATAACAACAGGAGAGATACAGCCGGGAAAAGTAATGTTAAGCATGCTCAGATGTCTAACAATGGGAGAGGCTTATCTACTAGTATTAGAATAGAAAACCTCCATACTGGAAGTGCTGATGATGTTACTTACGATGAGGTAACATCAATGGCTTTGGGTAAATTGCATACCAAGTCTAATCATCTTGGTTGTGCTAGGCATACAATGAACAAGAATAATAATCAAATAATGAATTTGCAGCTTATATCCTTTTGTTCTCAAGATCATGATGTGTTATCACACTTGAGCTGCGGCGTAGATCTTCTTGTGGAATGA 2784 0.4318 MTRAVHSRFFKDENGPISDHLRNHVHLTNCIHLKNHMHRHSPILAERSLMRGLIVLQRSRSLRDPSTSPPSWHSPSILESFSKKLEKEAAVREGRRSVGIERRREGRRLSGSSPTVASVATSKFAAAEVSRGNDGGSFISDRRDARGIKGEESSRRSRRSDHSGGTEEPLQDGHNLVMVNHLVSGKAEPRDKKISQKGKQIQHGHLTTLSEHLKECPMDSDDVQNSHLHRHGRRSREEKTSEEPEASISGYCNGLNRVKKRKFRGTRRARAAMGSRDFGVLNELSVASNSLVQGSTQRKYYMEDGEEEDAKLGVTRAPRNGCGIPFNWSRIHHGGKTFLDMAGRSLSCGLSDSRLRKDGSIRQGKDGSDMPMASDHSSSSTKSDAEATPLLVEPSGSQGSTDNAAWVHEYSGELGIFADHSLKHDVDSDLASEARSGGQLKFRGDRHGRHQSLTQKYMPRTFKDLVGQNLVAQALLNAVLKRKIGFLYVFYGPHGTGKTSCARIFARALNCQSSEHPKPCGVCNSCIAHDLGKSRNVREVGPVSNFVFESIMDLLDSMIISQMQSQYRVFIFDDCDTLSPDSWSAISKVLDRAPRRVVFVLISTSLDHLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLREIMEAGVEPLALMSQLATIITDVLAGSYVFTKERLRRKFFRQPTLSKEDMEKLRQAMKTPSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPSSSADTSFNHSPLVLNNNRRDTAGKSNVKHAQMSNNGRGLSTSIRIENLHTGSADDVTYDEVTSMALGKLHTKSNHLGCARHTMNKNNNQIMNLQLISFCSQDHDVLSHLSCGVDLLVE* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00942 927 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 454 817 - -
Eupl02g00942 927 FunFam DNA polymerase III subunit gamma/tau 626 688 - -
Eupl02g00942 927 Pfam DNA polymerase III subunits gamma and tau domain III 681 740 IPR022754 GO:0003887
Eupl02g00942 927 MobiDBLite consensus disorder prediction 217 248 - -
Eupl02g00942 927 MobiDBLite consensus disorder prediction 372 386 - -
Eupl02g00942 927 SUPERFAMILY post-AAA+ oligomerization domain-like 689 802 IPR008921 GO:0003677|GO:0006260
Eupl02g00942 927 MobiDBLite consensus disorder prediction 92 176 - -
Eupl02g00942 927 Gene3D - 444 622 IPR027417 -
Eupl02g00942 927 MobiDBLite consensus disorder prediction 137 168 - -
Eupl02g00942 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 675 IPR027417 -
Eupl02g00942 927 CDD HLD_clamp_pol_III_gamma_tau 625 688 IPR045085 -
Eupl02g00942 927 SMART AAA_5 484 625 IPR003593 GO:0016887
Eupl02g00942 927 MobiDBLite consensus disorder prediction 92 109 - -
Eupl02g00942 927 NCBIfam DNA polymerase III subunit gamma/tau 451 799 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Eupl02g00942 927 Gene3D - 626 688 - -
Eupl02g00942 927 Pfam DNA polymerase III, delta subunit 468 625 - -
Eupl02g00942 927 FunFam DNA polymerase III subunit gamma/tau 447 624 - -
Eupl02g00942 927 MobiDBLite consensus disorder prediction 353 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00942 Eupl-Chr2 12905526 12975281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00942 451 737 Core DNA Replication Machinery Family AT1G21690 25.510 1.65e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00942 - - nnu:104586557 1280.77