Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00941 ATGGCTTCTGCTGCAATTTTTTCTGCTATGAGAAGGAGAAGATCGCCTTCGTTAGAGGCCTTCTTGGCTCCAGTTCATCTCAGCGAGATCGGGTTTGTGCAGACCCTCGCTGTCGTGTCCGCCGAATTGATCTCGTCGTTTTCAGATCACTCGTTCCCTTTGCAGCGTAGGAACTCCAGATCTCTGATTCGGAAGATCGAGATCTTTGTTGTACTTTTAGAATTTATCAGAGACTCTGATATCAGTATTCCTTCCACCGCCATTCTCTGCTTTAAGGAGCTTTACCTCCTCATGTACCGATCTAAGATCCTTCTTGATTACTGCTCGCAGTCCAGGCGGCTATGGCTCCTCCTTCAAAATACTTCGATTTCGGTCCATTTCCATGACCTCAACCAGGAGATCTCAACGCTTCTCGATGTTTTCCCTTTGAAAGAGCTCGATCTAACGCAGGATGTCAGAGAGCAGATTGAGCTTCTGCAGAAGCAATCGAGAAGAGCCAAATTGTTCATTGATGAGAGCGACGAGTTGGTGAGACAACGGCTTTTCTCATTCCTTGATGAATTTGAGCAGGGACGGGTTCCGGATCCGGTGGAGCTGCGGGCAGTTTTTATGGACAAACTGGGAATTCGAGACGCAAAAACTTGTAGATCTGAGATTGAGTTTCTCGAAGAACATATTTATAATCAGGAGGATGTTGAACCAACGGTCTCGGTACTCAATGGATTTGTTGCTCTCACTAGGTACTGCAGATTCTTGCTTTTCGGATTTGAGGAAGAAGAAGAAGGTTATGGGAATCCCAAGAAACAAAGAAGGGGTCTAATTACTCAAGAGATTGGGGAAACCTTCCTTACAATTCCGAAGGACTTTTGTTGCCCAATCTCTTTGGATTTGATGCAAGATCCAGTGATTATCTCAACTGGGCAGACCTACGATCGAGCTTCGATATCCCGCTGGATGGAAGAAGGGCATTGCAGCTGCCCAAAGACGGGGCAGATGCTCACCCACATCCGTCTTGTTCCGAATCGAGCTCTCCGAAGTCTAATTTCCCAATGGTGCACTGCTCATGGGATCCCCTTTGAGCCACCAGAGGGCACCGATACGTCAGCGGAAACTGTTGCTATGGCTACATCCACCAAGGCCACGTATGAAGCCAACAAGGCCACAGCTGAGCTTCTCGTTCAGCAGCTATCAAATGGGTCAAAGGGAGCAAAAACTCTTGCTGCTCGTGAGCTTCGGTTTCTAGCAAAAACTGGAAAGGAGAACCGTGCTTGCATTGCAGAATCTGGGGCAATCCCCCTTCTTCAGAAGCTACTTTCATCACCAAATCCAGTTGCGCAAGAAAATTCAGTAACTGCCATTCTCAATTTATCGATCCATGACAAGAACAAGAGCCGAATTATGGAGGAAGCAGGTTGTCTTAGATCGATTGTTGAGGTTCTTAGATTCGGCATCACAACTGAGGCAAGGGAAAATGCTGCAGCGACACTTTTCAGCCTCTCCGCAGTTCATGATTACAAGATGAGTATCACGGATGAGGAAGGGGCGGTTGAGGCCCTGGCAGGGATGTTAAGAGAGGGGAGCCCGAGAGGAAAGAAGGATGCTGTAACAGCACTATTTAATCTGTCTACCCACGCGGATAATTGCAAGAGAATGATTGAGGCAGGGGCTATAACAGCCTTGGTGGGGGCATTGGGAACTGAAGGGGTGGCAGAAGAGGCGGCGGGAGCATTGGCGTTGCTTGTTAGGCAGCCAATCGGGGCCGAAGCTGTAGGAAAGGAGGAAATGGCAGTAGCAGGATTGATTGGGATGATGCGGCAGGGGACGCCAAGGGGGAAGGAGAACGCAGTCACAGCTTTGCTCGAGTTGTGTCGGAGTGGTGGGGCAGCTGCGACTGAGAGAGTGACAAGAGTACCAGCATTGGCGGGCTTACTTCAGAGTTTACTGTTTACGGGTACAAAGCGAGCAAGACGAAAGGCAGCATCACTTGCGAGAGTTTTCCAGAGGTGTGAGGCTTCAGCCTTGCCTATGGGGGGTTCGGGTGTAGAATATGCAGTCACGGGAAACTCAACAGCAAATCGTGTTCCAAGTTTTGCTCTGTCTGTGCCTATGTCTATGCCTGTATCAGTGCCTGTGTCCATATCAGTGCCTGTTTTGTAG 2157 0.4896 MASAAIFSAMRRRRSPSLEAFLAPVHLSEIGFVQTLAVVSAELISSFSDHSFPLQRRNSRSLIRKIEIFVVLLEFIRDSDISIPSTAILCFKELYLLMYRSKILLDYCSQSRRLWLLLQNTSISVHFHDLNQEISTLLDVFPLKELDLTQDVREQIELLQKQSRRAKLFIDESDELVRQRLFSFLDEFEQGRVPDPVELRAVFMDKLGIRDAKTCRSEIEFLEEHIYNQEDVEPTVSVLNGFVALTRYCRFLLFGFEEEEEGYGNPKKQRRGLITQEIGETFLTIPKDFCCPISLDLMQDPVIISTGQTYDRASISRWMEEGHCSCPKTGQMLTHIRLVPNRALRSLISQWCTAHGIPFEPPEGTDTSAETVAMATSTKATYEANKATAELLVQQLSNGSKGAKTLAARELRFLAKTGKENRACIAESGAIPLLQKLLSSPNPVAQENSVTAILNLSIHDKNKSRIMEEAGCLRSIVEVLRFGITTEARENAAATLFSLSAVHDYKMSITDEEGAVEALAGMLREGSPRGKKDAVTALFNLSTHADNCKRMIEAGAITALVGALGTEGVAEEAAGALALLVRQPIGAEAVGKEEMAVAGLIGMMRQGTPRGKENAVTALLELCRSGGAAATERVTRVPALAGLLQSLLFTGTKRARRKAASLARVFQRCEASALPMGGSGVEYAVTGNSTANRVPSFALSVPMSMPVSVPVSISVPVL* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00941 718 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Eupl02g00941 718 SUPERFAMILY RING/U-box 273 359 - -
Eupl02g00941 718 SUPERFAMILY ARM repeat 390 667 IPR016024 -
Eupl02g00941 718 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Eupl02g00941 718 SMART arm_5 418 458 IPR000225 GO:0005515
Eupl02g00941 718 SMART arm_5 502 543 IPR000225 GO:0005515
Eupl02g00941 718 SMART arm_5 544 582 IPR000225 GO:0005515
Eupl02g00941 718 SMART arm_5 459 501 IPR000225 GO:0005515
Eupl02g00941 718 Pfam U-box domain 285 355 IPR003613 GO:0004842|GO:0016567
Eupl02g00941 718 Gene3D - 365 690 IPR011989 -
Eupl02g00941 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 514 556 IPR000225 GO:0005515
Eupl02g00941 718 Pfam Armadillo/beta-catenin-like repeat 419 457 IPR000225 GO:0005515
Eupl02g00941 718 FunFam RING-type E3 ubiquitin transferase 284 359 - -
Eupl02g00941 718 CDD RING-Ubox_PUB 286 338 IPR045210 -
Eupl02g00941 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 358 IPR013083 -
Eupl02g00941 718 PANTHER U BOX DOMAIN-CONTAINING 59 669 - -
Eupl02g00941 718 FunFam RING-type E3 ubiquitin transferase 361 683 - -
Eupl02g00941 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00941 Eupl-Chr2 12882039 12884911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00941 1 711 U-box Gene Family AT1G29340 66.712 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00941 - - nnu:104591272 1046.96