Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00937 ATGAGCAGTGCTGCCCACAATTTCGCATTGACTCCCGGAAACTGGCGTCCGGGAGGTAACTCTACCGGCCGTGTTCCTGATAATAATGATTGGAACTGGAGGCCATCCATGGTACCCCGACCCTTTCCATACCAACCAGTGGAAGCGAGTCGGGGTGCAGAGGATACTTGGTTTTTATTTGAGGAAAGAGTGAGAACAGGCCCTTACGGTTTAACCCGATTCCCATGGCAACCTCATTCTCCAATCCGAATTCTTGTCGTGGACAGCGCGACGGCACAAGCAGTGAACCCCAGGCTCAGACAGTTCATACAACAGTCCCCTCCAAGGATCAGAGGGCAGTGGCCTATGCAACGGGCTCCACAGGAAGAGGGATCTGGGTTGACCCCAGAAGAGCAAAGGAAGGCCTTAAATAAGTTGAAGAAACAAATTTACAGCCCTCCCCCTAAAACCATGAGAAGGTCTCTATACTACAGAGATAAATCCAGTACTGACTTCAATACAAAGGAAGAAGAAAAGGATGAAACTGGCAAAGGGTGCGCGATTTGCTTAGAAGACTTTGATCCTTACCAAGAGGTGTTAGTCACCCCTTGCAACCACATGTTCCACAATGATTGCATTGTCCCATGGGTGAAGAGCAATGGTCAGTGTCCGGTTTGCAGGTTCGTGCTCGGCCAACGGAGACAGGACAATAACAATGTCAATGTGGCTCTCGATGATCCTGTGGCAGATGATCTCATTTCACTTATAAGGGCCATGGAAGAAGCCTTTCAGTGGGTGAACATCCGTCGCTAA 792 0.4949 MSSAAHNFALTPGNWRPGGNSTGRVPDNNDWNWRPSMVPRPFPYQPVEASRGAEDTWFLFEERVRTGPYGLTRFPWQPHSPIRILVVDSATAQAVNPRLRQFIQQSPPRIRGQWPMQRAPQEEGSGLTPEEQRKALNKLKKQIYSPPPKTMRRSLYYRDKSSTDFNTKEEEKDETGKGCAICLEDFDPYQEVLVTPCNHMFHNDCIVPWVKSNGQCPVCRFVLGQRRQDNNNVNVALDDPVADDLISLIRAMEEAFQWVNIRR* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00937 263 CDD RING-H2_PA-TM-RING 179 220 - -
Eupl02g00937 263 SMART ring_2 179 219 IPR001841 -
Eupl02g00937 263 FunFam RING/U-box superfamily protein 163 236 - -
Eupl02g00937 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 237 IPR013083 -
Eupl02g00937 263 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Eupl02g00937 263 MobiDBLite consensus disorder prediction 111 130 - -
Eupl02g00937 263 SUPERFAMILY RING/U-box 169 227 - -
Eupl02g00937 263 PANTHER TARGET OF ERK KINASE MPK-1 130 225 - -
Eupl02g00937 263 MobiDBLite consensus disorder prediction 1 28 - -
Eupl02g00937 263 Pfam Ring finger domain 179 220 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00937 Eupl-Chr2 12723290 12724668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00937 131 263 C3H Transcription Factor Family AT3G58720 45.946 3.87e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00937 - - mus:103992765 251.136