Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00892 ATGTCTCTGAGAAGGGCATTTCTCTCACAAAGGAGCACCAAACGCTCCTCTGACCTCTCGAAAGCCGTTCAAGAACTCAGAAACCTAAACAATTCAGAAGTAGAAGAGGAAGAACTGATTGAAGAATCCTCCCAACAACAGCTTAGTGGAGACGAGAAGGGGATCGATGAGGATTGCTGGTCTAAGATACTACCTGAGCTCCTCGGTGAGATCATCAAGCGAGTCGAGTCGAGTGAAGACCGGTGGCCTCACCGGAAGCACGTCGTCGCCTGCGCCGGCGTCTGCAAGCGCTGGCGTGACATCATTAGAGGGATTGTTCGCTCTCCCCTACACACTGGGAAGATCACTTTCCCTTCTTCCCTCAAACAGCCGGGACCGCGCGATTTTCCCCTTCAATGTTTTATCAAAAGGAACAAGAAGAACTCGACGTTTTACCTTTATCTTGGTCCCACTCAAACATTAGTGGATAAGGGGAAATTTCTCTTAGCAGCACGAAGGTTTAGACATGGCGCTCACCCTGAATATATTATATCTCTTGATGCTGATGACCTGTCCCAAGGAAGCAATGCGTATGTTGGGAAGTTGACCTCAGATTTTCTTGGCACCAATTTCACAATCTATGACAGCGAGCCACCACTCTGTGGTGTAAAGCCCTCAAACAGCCGATCAAGCCGCCGGTTTGCAAGTAAGCAAATCAGTCCTCAGGTTCCTGCAGGCAACTTTGTGATTGGGCAGGTCTCCTACAAGTTCAACCTGTTGAAATCAAGAGGGCCAAGAAGGATGCTCTGCACGATGCAGTGCCCATGGACACGAGAAACTGCTGCTGATGAACCTCAGAAGAACAACTCCAAAATGCAGAGCCCAGCAGCAGCCAGCACCTCTACCGGGTGCATGGTTCTGAGGAATAAGGCTCCGAAGTGGCACGAAAACTTGCAGTGCTGGTGCCTGAATTTCCATGGCCGAGTGACAGTTGCTTCGGTAAAGAATTTCCAGCTGGTTGCGACAGTGGACCCCAGCCAACCAGGAGGGAATGGGGATGAGGAAACGGTGCTCCTCCAGTTTGGGAAGGTTGGGGATGACATGTTCACGATGGATTACAGGCAGCCCTTGTCGGCCTTCCAGGCATTTGCCATCTGCCTCACAAGCTTTGGTACAAAACTCGCCTGCGAGTGA 1173 0.5072 MSLRRAFLSQRSTKRSSDLSKAVQELRNLNNSEVEEEELIEESSQQQLSGDEKGIDEDCWSKILPELLGEIIKRVESSEDRWPHRKHVVACAGVCKRWRDIIRGIVRSPLHTGKITFPSSLKQPGPRDFPLQCFIKRNKKNSTFYLYLGPTQTLVDKGKFLLAARRFRHGAHPEYIISLDADDLSQGSNAYVGKLTSDFLGTNFTIYDSEPPLCGVKPSNSRSSRRFASKQISPQVPAGNFVIGQVSYKFNLLKSRGPRRMLCTMQCPWTRETAADEPQKNNSKMQSPAAASTSTGCMVLRNKAPKWHENLQCWCLNFHGRVTVASVKNFQLVATVDPSQPGGNGDEETVLLQFGKVGDDMFTMDYRQPLSAFQAFAICLTSFGTKLACE* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00892 390 ProSitePatterns Tub family signature 1. 318 331 IPR018066 -
Eupl02g00892 390 PRINTS Tubby superfamily signature 175 191 IPR000007 -
Eupl02g00892 390 PRINTS Tubby superfamily signature 191 215 IPR000007 -
Eupl02g00892 390 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Eupl02g00892 390 PRINTS Tubby superfamily signature 240 267 IPR000007 -
Eupl02g00892 390 PRINTS Tubby superfamily signature 318 334 IPR000007 -
Eupl02g00892 390 PRINTS Tubby superfamily signature 300 317 IPR000007 -
Eupl02g00892 390 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Eupl02g00892 390 CDD F-box_AtTLP-like 60 101 - -
Eupl02g00892 390 SUPERFAMILY Tubby C-terminal domain-like 111 390 IPR025659 -
Eupl02g00892 390 Coils Coil 19 46 - -
Eupl02g00892 390 PANTHER TUBBY-RELATED 16 388 - -
Eupl02g00892 390 Pfam F-box domain 65 107 IPR001810 GO:0005515
Eupl02g00892 390 Pfam Tub family 121 385 IPR000007 -
Eupl02g00892 390 ProSitePatterns Tub family signature 2. 375 390 IPR018066 -
Eupl02g00892 390 Gene3D Tubby Protein; Chain A 116 390 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00892 Eupl-Chr2 11854628 11860212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00892 19 390 TUB Transcription Factor Family AT1G53320 65.699 4.04e-179 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Eupl02g00892 Tub 1.8e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00892 K19600 - nnu:104611568 593.193